View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2141_low_9 (Length: 206)

Name: NF2141_low_9
Description: NF2141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2141_low_9
NF2141_low_9
[»] chr3 (17 HSPs)
chr3 (1-55)||(29067286-29067340)
chr3 (1-53)||(3449366-3449418)
chr3 (1-55)||(20756041-20756095)
chr3 (1-55)||(28745772-28745826)
chr3 (3-47)||(42696870-42696914)
chr3 (8-55)||(21963438-21963485)
chr3 (8-55)||(21985874-21985921)
chr3 (1-55)||(8156204-8156258)
chr3 (4-46)||(17064326-17064368)
chr3 (1-55)||(25870449-25870503)
chr3 (1-55)||(27676358-27676412)
chr3 (1-55)||(28135724-28135778)
chr3 (2-55)||(39427905-39427958)
chr3 (1-55)||(13005929-13005983)
chr3 (1-47)||(24620284-24620330)
chr3 (1-42)||(22356139-22356180)
chr3 (122-170)||(44655870-44655918)
[»] chr7 (23 HSPs)
chr7 (1-55)||(44944922-44944976)
chr7 (1-50)||(21846503-21846552)
chr7 (1-56)||(22687736-22687791)
chr7 (1-55)||(27221420-27221474)
chr7 (1-50)||(5715292-5715341)
chr7 (1-55)||(5058531-5058585)
chr7 (1-55)||(8330118-8330172)
chr7 (1-55)||(11326388-11326442)
chr7 (1-55)||(26281382-26281436)
chr7 (6-55)||(8571250-8571299)
chr7 (1-55)||(4247358-4247412)
chr7 (1-55)||(7730416-7730469)
chr7 (1-55)||(8346606-8346660)
chr7 (1-55)||(9685317-9685371)
chr7 (1-55)||(24725550-24725604)
chr7 (1-53)||(24990146-24990198)
chr7 (8-55)||(11324988-11325035)
chr7 (125-176)||(37331961-37332012)
chr7 (1-55)||(14055253-14055307)
chr7 (1-55)||(14365281-14365335)
chr7 (5-55)||(20570952-20571002)
chr7 (1-43)||(30294177-30294219)
chr7 (1-49)||(39182262-39182310)
[»] chr6 (19 HSPs)
chr6 (1-55)||(6943533-6943587)
chr6 (1-55)||(7918454-7918508)
chr6 (1-55)||(15528183-15528237)
chr6 (1-55)||(7223521-7223575)
chr6 (1-55)||(17543813-17543867)
chr6 (1-55)||(30912485-30912539)
chr6 (1-55)||(5422821-5422875)
chr6 (1-47)||(17103204-17103250)
chr6 (1-55)||(17250059-17250113)
chr6 (1-55)||(26053369-26053423)
chr6 (1-55)||(26073422-26073476)
chr6 (11-55)||(23897823-23897867)
chr6 (2-52)||(2912323-2912373)
chr6 (1-55)||(3574005-3574059)
chr6 (1-55)||(27233350-27233404)
chr6 (6-50)||(8545043-8545087)
chr6 (3-55)||(10509096-10509148)
chr6 (1-49)||(10958266-10958314)
chr6 (4-44)||(18491121-18491161)
[»] chr4 (19 HSPs)
chr4 (1-55)||(5362036-5362090)
chr4 (1-55)||(8011289-8011343)
chr4 (1-55)||(5375666-5375720)
chr4 (1-55)||(24719519-24719573)
chr4 (5-50)||(9149813-9149858)
chr4 (4-55)||(8889233-8889284)
chr4 (1-52)||(10142901-10142952)
chr4 (1-55)||(13023569-13023624)
chr4 (1-55)||(7044729-7044783)
chr4 (1-55)||(7452422-7452476)
chr4 (1-55)||(13551695-13551749)
chr4 (1-55)||(36120826-36120880)
chr4 (122-199)||(22278625-22278701)
chr4 (1-55)||(4156765-4156819)
chr4 (1-55)||(9770114-9770168)
chr4 (1-55)||(17466081-17466135)
chr4 (1-55)||(23065036-23065090)
chr4 (1-50)||(610668-610717)
chr4 (3-55)||(7815561-7815613)
[»] chr1 (24 HSPs)
chr1 (1-54)||(42180139-42180192)
chr1 (1-55)||(9352136-9352190)
chr1 (1-55)||(9955108-9955162)
chr1 (1-55)||(19010019-19010073)
chr1 (1-55)||(23528658-23528712)
chr1 (1-55)||(25146841-25146895)
chr1 (1-55)||(30619077-30619131)
chr1 (6-53)||(16125533-16125580)
chr1 (1-55)||(12513283-12513337)
chr1 (1-55)||(13276339-13276393)
chr1 (1-55)||(14074443-14074497)
chr1 (1-55)||(18304884-18304938)
chr1 (1-55)||(21846341-21846395)
chr1 (3-55)||(13100195-13100247)
chr1 (1-55)||(12800654-12800708)
chr1 (1-55)||(41032743-41032797)
chr1 (2-50)||(12003241-12003289)
chr1 (2-46)||(27917534-27917578)
chr1 (1-52)||(9327291-9327342)
chr1 (1-44)||(47785794-47785837)
chr1 (125-200)||(50469939-50470013)
chr1 (1-55)||(9128913-9128967)
chr1 (1-55)||(34478843-34478897)
chr1 (122-170)||(27295927-27295975)
[»] chr5 (13 HSPs)
chr5 (1-55)||(23172505-23172559)
chr5 (1-55)||(43234870-43234924)
chr5 (1-56)||(18051602-18051657)
chr5 (1-55)||(20923720-20923774)
chr5 (1-55)||(22645792-22645846)
chr5 (1-55)||(18843717-18843771)
chr5 (1-55)||(19042462-19042516)
chr5 (1-55)||(21059228-21059282)
chr5 (1-53)||(38158329-38158381)
chr5 (3-55)||(24106645-24106697)
chr5 (7-55)||(27340259-27340307)
chr5 (1-55)||(19578944-19578998)
chr5 (1-55)||(20320926-20320980)
[»] chr2 (12 HSPs)
chr2 (1-55)||(1404785-1404839)
chr2 (1-55)||(23863394-23863448)
chr2 (1-50)||(19245155-19245204)
chr2 (1-55)||(31238050-31238104)
chr2 (1-55)||(35566027-35566081)
chr2 (1-55)||(31578007-31578061)
chr2 (1-55)||(36429850-36429904)
chr2 (1-54)||(30432421-30432474)
chr2 (4-55)||(15588923-15588973)
chr2 (1-55)||(1690835-1690889)
chr2 (3-43)||(15627659-15627699)
chr2 (125-204)||(28548458-28548537)
[»] scaffold0417 (1 HSPs)
scaffold0417 (1-53)||(7530-7582)
[»] chr8 (17 HSPs)
chr8 (3-54)||(31424167-31424218)
chr8 (1-55)||(5922051-5922105)
chr8 (1-55)||(15294672-15294726)
chr8 (1-55)||(15475041-15475095)
chr8 (1-55)||(17646995-17647049)
chr8 (1-53)||(45403031-45403083)
chr8 (3-46)||(23136353-23136396)
chr8 (1-55)||(477120-477174)
chr8 (1-55)||(11879602-11879656)
chr8 (1-55)||(11897018-11897072)
chr8 (3-55)||(3094326-3094378)
chr8 (11-55)||(22910275-22910319)
chr8 (1-44)||(9036757-9036800)
chr8 (1-55)||(19704528-19704583)
chr8 (1-55)||(24056641-24056695)
chr8 (125-173)||(17004745-17004793)
chr8 (125-173)||(17572455-17572503)
[»] scaffold0186 (1 HSPs)
scaffold0186 (1-55)||(8445-8499)
[»] scaffold0510 (1 HSPs)
scaffold0510 (11-55)||(174-218)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-44)||(37250-37293)
[»] scaffold0115 (1 HSPs)
scaffold0115 (1-35)||(35152-35186)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1-43)||(93789-93831)


Alignment Details
Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29067286 - 29067340
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29067286 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 29067340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3449418 - 3449366
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttctt 53  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3449418 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttctt 3449366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20756041 - 20756095
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  20756041 tgttgtcaaaatcccgacttaaattataaaattcaggattttgcgattttcttca 20756095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28745772 - 28745826
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  28745772 tgttgtcaaaatcccgatttaaatcctaaaatttaggattttgcgactttcttca 28745826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 42696870 - 42696914
Alignment:
Q  3 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgac 47  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  42696870 ttgtcaaaatcccgacttaaatcataaaattcaggattttgcgac 42696914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 21963438 - 21963485
Alignment:
Q  8 aaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  21963438 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttca 21963485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 21985874 - 21985921
Alignment:
Q  8 aaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  21985874 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttca 21985921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8156258 - 8156204
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||| ||| ||||    
T  8156258 tgttgtcaaaatcccaacttaaattctaaaattcagaattttacgatttttttca 8156204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 17064326 - 17064368
Alignment:
Q  4 tgtcaaaatcccgacttaaattctaaaattcaggattttgcga 46  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  17064326 tgtcaaaatcccgacttaaatcttaaaattcaggattttgcga 17064368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25870503 - 25870449
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||| |||||||||| ||||||| || ||||||| |||||||||||    
T  25870503 tgttgtcaaaatctcgacttaaatcctaaaatccaagattttgtgactttcttca 25870449  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27676358 - 27676412
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||| |||||||||  |||||| ||||||||||||||||| ||||    
T  27676358 tgttgtcaaaatcctgacttaaatcgtaaaatgcaggattttgcgactttattca 27676412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28135724 - 28135778
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||| |||| ||||||  |||||||||||||||||||||||| ||||    
T  28135724 tgttgtcaaaattccgatttaaatcgtaaaattcaggattttgcgactttattca 28135778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 39427905 - 39427958
Alignment:
Q  2 gttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||| ||||||| |||||| | ||||||||| ||||||||||    
T  39427905 gttgtcaaaatcccgatttaaattttaaaatcctggattttgcaactttcttca 39427958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13005929 - 13005983
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||| |||||||||||  ||||||||  ||||||||||||| ||||    
T  13005929 tgttgtcaaaatctcgacttaaatttcaaaattcataattttgcgactttattca 13005983  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24620330 - 24620284
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgac 47  Q
    |||||||||||| ||||||||||| |||||||| | |||||||||||    
T  24620330 tgttgtcaaaattccgacttaaatcctaaaatttaagattttgcgac 24620284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22356180 - 22356139
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggatttt 42  Q
    |||| ||||||| ||||||||||| |||||||||||||||||    
T  22356180 tgttatcaaaattccgacttaaatcctaaaattcaggatttt 22356139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 44655918 - 44655870
Alignment:
Q  122 tttgacacaatacggacaccatgggtaatttaaacatttcaaccttaaa 170  Q
    ||||||||||||  ||||||||||| |||||| || |||||||||||||    
T  44655918 tttgacacaatatagacaccatgggcaatttagacttttcaaccttaaa 44655870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44944976 - 44944922
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44944976 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttca 44944922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 21846552 - 21846503
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21846552 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt 21846503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22687791 - 22687736
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaa 56  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  22687791 tgttgtcaaaatcccgacttaaatcctaaaattcaggaatttgcgactttcttcaa 22687736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27221420 - 27221474
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  27221420 tgttgttaaaatcccaacttaaattctaaaattcaggattttgcgactttcttca 27221474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5715292 - 5715341
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt 50  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5715292 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgacttt 5715341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5058531 - 5058585
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  5058531 tgttgtcaaaatcccgacttaaatcctaaaattcagaattttgcgattttcttca 5058585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8330172 - 8330118
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||    
T  8330172 tgttgtcaaaatcctgacctaaattctaaaattcatgattttgcgactttcttca 8330118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 11326388 - 11326442
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  11326388 tgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttca 11326442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26281436 - 26281382
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  26281436 tgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttca 26281382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 8571250 - 8571299
Alignment:
Q  6 tcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  8571250 tcaaaatcccgacttaaatcataaaatccaggattttgcgactttcttca 8571299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4247358 - 4247412
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| | |||||| ||||||||||||||||||  ||||||||||    
T  4247358 tgttgtcaaaatcccaatttaaatcctaaaattcaggattttgtaactttcttca 4247412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7730469 - 7730416
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||    
T  7730469 tgttgtcaaaatcctgacttaaatcctaaaatccagg-ttttgcgactttcttca 7730416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8346660 - 8346606
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||| ||| |||||  ||||||| |||||||||||||||||||||    
T  8346660 tgttgtcaaaatcctgacctaaatattaaaatttaggattttgcgactttcttca 8346606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9685371 - 9685317
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||| ||||||| || |||||||| |||||||||||||||| ||||    
T  9685371 tgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttca 9685317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24725604 - 24725550
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||| ||||||||| ||||||| || |||||| ||||||||||||    
T  24725604 tgttgtcaaaatccagacttaaatcctaaaatccaagattttacgactttcttca 24725550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24990198 - 24990146
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttctt 53  Q
    |||||||||||| ||||||||||| | |||||| ||||||||| |||||||||    
T  24990198 tgttgtcaaaattccgacttaaatccaaaaatttaggattttgtgactttctt 24990146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 11324988 - 11325035
Alignment:
Q  8 aaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||| |||||||||| ||||||| || ||||||||    
T  11324988 aaaatcccgacttaaatcctaaaattcatgattttgggattttcttca 11325035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 37331961 - 37332012
Alignment:
Q  125 gacacaatacggacaccatgggtaatttaaacatttcaaccttaaagcaggg 176  Q
    |||||||| | |||| || |||||||||| ||||||||||||||||||||||    
T  37331961 gacacaattcagacatcaggggtaatttagacatttcaaccttaaagcaggg 37332012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14055253 - 14055307
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| |||||||| ||||| || ||||||| || |||||||||||||||||||    
T  14055253 tgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttca 14055307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14365281 - 14365335
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| |||||||| ||||| || ||||||| || |||||||||||||||||||    
T  14365281 tgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttca 14365335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 20571002 - 20570952
Alignment:
Q  5 gtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| |||||||||||||||| |||| || ||||||| |||||||||||    
T  20571002 gtcaaactcccgacttaaattctgaaatccaagattttgtgactttcttca 20570952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30294177 - 30294219
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttg 43  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||    
T  30294177 tgttgtcaaaatcccaacttaaatcctaaaatccaggattttg 30294219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39182262 - 39182310
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt 49  Q
    ||||| |||||||| ||||||||| |||||||  |||||||||||||||    
T  39182262 tgttgacaaaatcctgacttaaatcctaaaatctaggattttgcgactt 39182310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6943587 - 6943533
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6943587 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttca 6943533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7918508 - 7918454
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7918508 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttttttca 7918454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 15528237 - 15528183
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15528237 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttca 15528183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7223521 - 7223575
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  7223521 tgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttca 7223575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 17543867 - 17543813
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  17543867 tgttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgacttttttca 17543813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30912539 - 30912485
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  30912539 tgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttca 30912485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5422875 - 5422821
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| |||||||||| |||||||| ||||| ||||    
T  5422875 tgttgtcaaaatcccgacttaaatactaaaattcatgattttgcaactttattca 5422821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17103204 - 17103250
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgac 47  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||    
T  17103204 tgttgtcaaaatcccgacttaaatcttaaaattcaggattttgcgac 17103250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17250059 - 17250113
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  17250059 tgttgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttca 17250113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26053423 - 26053369
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||||||||||  ||||||  |||||||||||||||||||||    
T  26053423 tgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttca 26053369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26073476 - 26073422
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||||||||||  ||||||  |||||||||||||||||||||    
T  26073476 tgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttca 26073422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 23897823 - 23897867
Alignment:
Q  11 atcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  23897823 atcccgacttaaatcctaaaatgcaggattttgcgactttcttca 23897867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 2912373 - 2912323
Alignment:
Q  2 gttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttct 52  Q
    |||||||||||||||||||||||  ||||||| |||||||||| |||||||    
T  2912373 gttgtcaaaatcccgacttaaatcttaaaatttaggattttgcaactttct 2912323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3574059 - 3574005
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||| ||||||| ||||||||||||||||||| ||| |||| |||||||||||||    
T  3574059 tgttttcaaaattccgacttaaattctaaaatccagaatttcgcgactttcttca 3574005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27233404 - 27233350
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||| | ||||||||||| ||||||| |||||||||| |||||||||||    
T  27233404 tgttgtcaaactaccgacttaaatcctaaaatccaggattttgtgactttcttca 27233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 8545087 - 8545043
Alignment:
Q  6 tcaaaatcccgacttaaattctaaaattcaggattttgcgacttt 50  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||    
T  8545087 tcaaaatcccgatttaaatcctaaaatttaggattttgcgacttt 8545043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 10509148 - 10509096
Alignment:
Q  3 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||| ||||||||| ||||||||||| | |||| |||||||||||    
T  10509148 ttgtcaaaatccagacttaaatcctaaaattcagaaatttgtgactttcttca 10509096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10958314 - 10958266
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt 49  Q
    ||||||||||||| ||||||||||   ||||||||||||||||||||||    
T  10958314 tgttgtcaaaatcgcgacttaaatctcaaaattcaggattttgcgactt 10958266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 18491161 - 18491121
Alignment:
Q  4 tgtcaaaatcccgacttaaattctaaaattcaggattttgc 44  Q
    ||||||||||||||||||||| ||||||| ||| |||||||    
T  18491161 tgtcaaaatcccgacttaaatcctaaaatccagaattttgc 18491121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5362090 - 5362036
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5362090 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttca 5362036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8011343 - 8011289
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  8011343 tgttgtcaaaatcccaactcaaatcctaaaattcaggattttgcgactttcttca 8011289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5375666 - 5375720
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| || |||||||||||||| | |||||||||||||||||||    
T  5375666 tgttgtcaaaatcccaacctaaattctaaaatttaagattttgcgactttcttca 5375720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24719519 - 24719573
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||||||| ||||    
T  24719519 tgttgtcaaaatctcgacttaatttctaaaattcaagattttgcgactttattca 24719573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 9149858 - 9149813
Alignment:
Q  5 gtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt 50  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||    
T  9149858 gtcaaaatcccgacttaaatcctaaaatttaggattttgcgacttt 9149813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 8889233 - 8889284
Alignment:
Q  4 tgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||||||| ||||||| |||||||||| || ||||||||    
T  8889233 tgtcaaaatcccgacttaaatcctaaaatccaggattttgtgaatttcttca 8889284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10142901 - 10142952
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttct 52  Q
    |||||| |||||||||||||||||||||||||| |  |||||||||||||||    
T  10142901 tgttgtgaaaatcccgacttaaattctaaaatttaatattttgcgactttct 10142952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13023569 - 13023624
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaa-ttcaggattttgcgactttcttca 55  Q
    ||||||||||||||| |||||||| |||||| || |||||||||||||||||||||    
T  13023569 tgttgtcaaaatcccaacttaaatcctaaaaatttaggattttgcgactttcttca 13023624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7044729 - 7044783
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||||||| || |||||||| ||||| ||||    
T  7044729 tgttgtcaaaatcccgacttaaatcctaaaatccatgattttgcaactttattca 7044783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7452422 - 7452476
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||| ||||| ||||    
T  7452422 tgttgtgaaaatcccgacttaaattctaaaatccagaattttgcaactttattca 7452476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13551749 - 13551695
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||| ||||||| || |||||||| |||||||||||||||| ||||    
T  13551749 tgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttca 13551695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36120826 - 36120880
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||| |||| ||||||| ||||||| |||||||||||| ||||||||    
T  36120826 tgttgtcaaaattccgatttaaattttaaaatttaggattttgcgattttcttca 36120880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 22278625 - 22278701
Alignment:
Q  122 tttgacacaatacggacaccatgggtaatttaaacatttcaaccttaaagcagggtcattttttgtaaatacaccaca 199  Q
    ||||||||||||| |||||||||||||||||  | ||||||  ||||||||| || ||  ||||||||||||||||||    
T  22278625 tttgacacaatacagacaccatgggtaatttggatatttcactcttaaagcatggaca-gttttgtaaatacaccaca 22278701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4156765 - 4156819
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||||||||||  ||||||| ||||||||  |||||| ||||    
T  4156765 tgttgtcaaaatcccgacttaaatcttaaaatttaggattttatgactttattca 4156819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9770114 - 9770168
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| |||||| ||||||||||||||||||  ||||||||| |||||| ||||    
T  9770114 tgttgttaaaatctcgacttaaattctaaaatctaggattttgtgacttttttca 9770168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17466081 - 17466135
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||| || ||||||||  ||||||| |||||||||||| ||||||||    
T  17466081 tgttgtcaaaattccaacttaaatcttaaaatttaggattttgcgattttcttca 17466135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23065090 - 23065036
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| |||| |||||||||||||||||||| ||| ||||||  ||||||||||    
T  23065090 tgttgttaaaaccccgacttaaattctaaaatccagtattttgtaactttcttca 23065036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 610717 - 610668
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt 50  Q
    ||||||||||||||| |||||||| |||||||||| || | |||||||||    
T  610717 tgttgtcaaaatcccaacttaaatactaaaattcatgactatgcgacttt 610668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 7815561 - 7815613
Alignment:
Q  3 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||| ||||||||||||||||| ||||||| ||| |||||| |||||| ||||    
T  7815561 ttgttaaaatcccgacttaaatcctaaaatacagcattttgtgactttattca 7815613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42180192 - 42180139
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttc 54  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42180192 tgttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactttcttc 42180139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9352190 - 9352136
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||||||||||||    
T  9352190 tgttgtcaaaatcccgacttaaatcctaaaatccagggttttgcgactttcttca 9352136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9955162 - 9955108
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  9955162 tgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttca 9955108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19010073 - 19010019
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  19010073 tgttgtcaaaatccggacttaaatcctaaaattcaggattttgcgacttttttca 19010019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23528658 - 23528712
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||||||||||||    
T  23528658 tgttgtcaaaatcccaacttaaatcttaaaattcaggattttgcgactttcttca 23528712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25146895 - 25146841
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  25146895 tgttgtcaaaatcctgacttaaatcctaaaattcagaattttgcgactttcttca 25146841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30619077 - 30619131
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  30619077 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgattttcttca 30619131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 16125580 - 16125533
Alignment:
Q  6 tcaaaatcccgacttaaattctaaaattcaggattttgcgactttctt 53  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  16125580 tcaaaatcctgacttaaatcctaaaattcaggattttgcgactttctt 16125533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12513283 - 12513337
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||| |||  |||||||||||||||||||||    
T  12513283 tgttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttca 12513337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13276393 - 13276339
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||| |||||| |||||||  |||||||||||||||||||||    
T  13276393 tgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttca 13276339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14074497 - 14074443
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||| ||||||| |||||||  |||||||||||||||||||||    
T  14074497 tgttgtcaaaatcccgtcttaaatcctaaaatgtaggattttgcgactttcttca 14074443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 18304938 - 18304884
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||    
T  18304938 tgttgtcaaaatcccaacttaaatcctaaaatccagtattttgcgactttcttca 18304884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21846395 - 21846341
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||    
T  21846395 tgttgtcaaaatcccgagttaaatcctaaaatccaggattttgcgacttttttca 21846341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 13100195 - 13100247
Alignment:
Q  3 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||| ||||||||||||||||  |||||||| ||||||||||||    
T  13100195 ttgtcaaaatcccaacttaaattctaaaatcgaggattttacgactttcttca 13100247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12800708 - 12800654
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| |||||||| |||||||| |||||||| |||||||| ||||||||||||    
T  12800708 tgttgtgaaaatcccaacttaaatcctaaaatttaggattttacgactttcttca 12800654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41032797 - 41032743
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||| ||||||||||  || ||||||||||||||||| ||||||||    
T  41032797 tgttgtcaaaatctcgacttaaatcgtagaattcaggattttgcgattttcttca 41032743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 12003289 - 12003241
Alignment:
Q  2 gttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt 50  Q
    ||||||||||||||||||||| || ||||||||||| ||||| ||||||    
T  12003289 gttgtcaaaatcccgacttaagttttaaaattcaggtttttgtgacttt 12003241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 27917578 - 27917534
Alignment:
Q  2 gttgtcaaaatcccgacttaaattctaaaattcaggattttgcga 46  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||    
T  27917578 gttgtcaaaatcccgacttaaattctgaaatctaggattttgcga 27917534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9327342 - 9327291
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttct 52  Q
    |||||| ||||||| ||||||||| |||||||| ||| ||||||||||||||    
T  9327342 tgttgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttct 9327291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47785794 - 47785837
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgc 44  Q
    ||||||||||||||| || ||||| |||||||||||||||||||    
T  47785794 tgttgtcaaaatcccaacataaatcctaaaattcaggattttgc 47785837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 50469939 - 50470013
Alignment:
Q  125 gacacaatacggacaccatgggtaatttaaacatttcaaccttaaagcagggtcattttttgtaaatacaccacac 200  Q
    |||||||||| |||||||| ||||||||  || ||||||| |||||||||||  | || |||||||||||||||||    
T  50469939 gacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggta-ttgttgtaaatacaccacac 50470013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9128967 - 9128913
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| |||||| |||||||||| |||||| | ||||| |||||||||||||||    
T  9128967 tgttgttaaaatcacgacttaaatcctaaaaattaggatcttgcgactttcttca 9128913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34478897 - 34478843
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| |||||||||||||||||  |||||||  |||||||| |||||||||||    
T  34478897 tgttgttaaaatcccgacttaaatcttaaaatttgggattttgtgactttcttca 34478843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 27295927 - 27295975
Alignment:
Q  122 tttgacacaatacggacaccatgggtaatttaaacatttcaaccttaaa 170  Q
    ||||||||||||  |||| |||||| ||||||||| |||||||||||||    
T  27295927 tttgacacaatatagacatcatgggcaatttaaacttttcaaccttaaa 27295975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23172559 - 23172505
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  23172559 tgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttca 23172505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43234870 - 43234924
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  43234870 tgttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactttcttca 43234924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18051657 - 18051602
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaa 56  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  18051657 tgttgtcaaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaa 18051602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20923720 - 20923774
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  20923720 tgttgtcaaaatcccgacttaaatcctaaaatccagaattttgcgactttcttca 20923774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22645846 - 22645792
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  22645846 tgttgtcaaaatcccgacttaaatcctaaaatccagtattttgcgactttcttca 22645792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18843717 - 18843771
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  18843717 tgttgttaaaattccgacttaaatcctataattcaggattttgcgactttcttca 18843771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19042516 - 19042462
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| ||||||||||||||||| | ||||||| |||||||||||    
T  19042516 tgttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactttcttca 19042462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21059282 - 21059228
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||| |||||| |||||||  |||||||||||||||||||||    
T  21059282 tgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttca 21059228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38158381 - 38158329
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttctt 53  Q
    |||||||||||| ||||||||||| |||||||  |||||||||||||||||||    
T  38158381 tgttgtcaaaattccgacttaaatcctaaaatctaggattttgcgactttctt 38158329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 24106645 - 24106697
Alignment:
Q  3 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||| || ||||||  |||||||||||||||||| ||||||||||    
T  24106645 ttgtcaaaatcctgatttaaatcataaaattcaggattttgcaactttcttca 24106697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 27340307 - 27340259
Alignment:
Q  7 caaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||||  ||||||| | |||||||||||||||||||    
T  27340307 caaaatcccgacttaaatcataaaatttatgattttgcgactttcttca 27340259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19578944 - 19578998
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||| || ||||||||  |||||| ||||||||||||| ||||||||    
T  19578944 tgttgtcaaaattccaacttaaatcataaaatccaggattttgcgattttcttca 19578998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20320926 - 20320980
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| || ||||| |||||||| | |||||||| ||||||||||    
T  20320926 tgttgtcaaaatcccaacctaaatcctaaaatttaagattttgcaactttcttca 20320980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1404785 - 1404839
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  1404785 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactttcttca 1404839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23863448 - 23863394
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  23863448 tgttgtcaaaatcccgacttaaattctaaaatcgagaattttgcgactttcttca 23863394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19245155 - 19245204
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt 50  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  19245155 tgttgtcaaaatcccgacttaaattttaaaattcaggattttacgacttt 19245204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31238104 - 31238050
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| |||||||  |||||||||| ||||||||||    
T  31238104 tgttgtcaaaatcccgacttaaatcctaaaatctaggattttgccactttcttca 31238050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 35566081 - 35566027
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| ||||||||   ||||||||||||||||||||||||||||    
T  35566081 tgttgtcaaaatcccaacttaaatcacaaaattcaggattttgcgactttcttca 35566027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31578007 - 31578061
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||||||||||||  ||||||| | |||||||||| ||||||||    
T  31578007 tgttgtcaaaatcccgacttaaatgttaaaatttaagattttgcgattttcttca 31578061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36429850 - 36429904
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| |||||||| ||| |||  |||||||||||||||||||||    
T  36429850 tgttgtcaaaatcccaacttaaatcctataatctaggattttgcgactttcttca 36429904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30432421 - 30432474
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttc 54  Q
    |||||||||||||| || ||||||||||||||  |||||||| |||||||||||    
T  30432421 tgttgtcaaaatcctgatttaaattctaaaatctaggatttttcgactttcttc 30432474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 15588973 - 15588923
Alignment:
Q  4 tgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||  | ||||||||||||||||||| |||||||||    
T  15588973 tgtcaaaatcccgacttaatct-taaaattcaggattttgcgtctttcttca 15588923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1690889 - 1690835
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||  |||||||||||  ||||||| ||||||||| |||||||||||    
T  1690889 tgttgtcaaaactccgacttaaatcttaaaatttaggattttgtgactttcttca 1690835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 15627659 - 15627699
Alignment:
Q  3 ttgtcaaaatcccgacttaaattctaaaattcaggattttg 43  Q
    |||||||||||||||||||||| |||||||| | |||||||    
T  15627659 ttgtcaaaatcccgacttaaatcctaaaatttatgattttg 15627699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 28548537 - 28548458
Alignment:
Q  125 gacacaatacggacaccatgggtaatttaaacatttca-accttaaagcagggtcattttttgtaaatacaccacactcca 204  Q
    |||||||||| ||||||||||||| |||| |||||||| |  | ||||||||| || |||||||||| ||| |||||||||    
T  28548537 gacacaatacagacaccatgggtagtttagacatttcagatataaaagcaggggca-tttttgtaaaaacaacacactcca 28548458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7582 - 7530
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttctt 53  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  7582 tgttgttagaatcccgacttaaattctaaaattcaggattttgcgactttctt 7530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 31424167 - 31424218
Alignment:
Q  3 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttc 54  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  31424167 ttgtcaaaatcctgacttaaattctaaaattcaggattttacgactttcttc 31424218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5922051 - 5922105
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  5922051 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgtgactttcttca 5922105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15294672 - 15294726
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  15294672 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttca 15294726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15475041 - 15475095
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  15475041 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttca 15475095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17646995 - 17647049
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  17646995 tgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttca 17647049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 45403031 - 45403083
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttctt 53  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||||||    
T  45403031 tgttgtcaaaatcgcgacttaaattctaaaatccaagattttgcgactttctt 45403083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 23136353 - 23136396
Alignment:
Q  3 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcga 46  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  23136353 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcga 23136396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 477174 - 477120
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||    
T  477174 tgttgtcaaaatcctgacttaaatcctaaaatccaggattttgtgactttcttca 477120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 11879602 - 11879656
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||| | ||||||||| ||||||||||||||||||| ||||||||||    
T  11879602 tgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttca 11879656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 11897018 - 11897072
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||| | ||||||||| ||||||||||||||||||| ||||||||||    
T  11897018 tgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttca 11897072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 3094378 - 3094326
Alignment:
Q  3 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||  ||||||||||  |||||||||||||||||| ||||||||||    
T  3094378 ttgtcaaaatttcgacttaaatcttaaaattcaggattttgctactttcttca 3094326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 22910319 - 22910275
Alignment:
Q  11 atcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||    
T  22910319 atcccgacttaaatcctaaaatttaggattttacgactttcttca 22910275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9036800 - 9036757
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgc 44  Q
    ||||||||||| || ||||||||| |||||||||||||||||||    
T  9036800 tgttgtcaaaaacctgacttaaatcctaaaattcaggattttgc 9036757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19704583 - 19704528
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattc-aggattttgcgactttcttca 55  Q
    ||||||||||||||| ||||||||  |||||||| ||| |||||||||||||||||    
T  19704583 tgttgtcaaaatcccaacttaaatcttaaaattcaaggtttttgcgactttcttca 19704528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24056695 - 24056641
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||| ||||||||  ||||||||| ||||||| ||||||||||||||||| ||||    
T  24056695 tgttatcaaaatcttgacttaaatcctaaaatccaggattttgcgactttattca 24056641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 17004745 - 17004793
Alignment:
Q  125 gacacaatacggacaccatgggtaatttaaacatttcaaccttaaagca 173  Q
    |||||||||| |||| |||| |||||||| | |||||||||||||||||    
T  17004745 gacacaatacagacatcatgagtaatttagatatttcaaccttaaagca 17004793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 17572503 - 17572455
Alignment:
Q  125 gacacaatacggacaccatgggtaatttaaacatttcaaccttaaagca 173  Q
    |||||||||| |||| |||| |||||||| | |||||||||||||||||    
T  17572503 gacacaatacagacatcatgagtaatttagatatttcaaccttaaagca 17572455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8445 - 8499
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    ||||||||||||||| |||||||| ||||||| || |||||||||||||||||||    
T  8445 tgttgtcaaaatccctacttaaatcctaaaatccacgattttgcgactttcttca 8499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 218 - 174
Alignment:
Q  11 atcccgacttaaattctaaaattcaggattttgcgactttcttca 55  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  218 atcccgacttaaatcctaaaatgcaggattttgcgactttcttca 174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37293 - 37250
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgc 44  Q
    |||||||||||| |||||||||||| |||||||||| |||||||    
T  37293 tgttgtcaaaatgccgacttaaattttaaaattcagaattttgc 37250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35186 - 35152
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattca 35  Q
    ||||||||||||| |||||||||||||||||||||    
T  35186 tgttgtcaaaatctcgacttaaattctaaaattca 35152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 93831 - 93789
Alignment:
Q  1 tgttgtcaaaatcccgacttaaattctaaaattcaggattttg 43  Q
    |||||||||||||||||||||||| ||||||| ||| ||||||    
T  93831 tgttgtcaaaatcccgacttaaatcctaaaatccagaattttg 93789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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