View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21420_high_1 (Length: 421)
Name: NF21420_high_1
Description: NF21420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21420_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 22 - 412
Target Start/End: Complemental strand, 38719659 - 38719269
Alignment:
| Q |
22 |
aaccaacacaattaatcaattatcactttaaaacctagacatgtttattatcccatgtgaagtttattacttatcaaagttagaaccccacctgcaacag |
121 |
Q |
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| T |
38719659 |
aaccaacacaattaatcaattatcactttaaaacctagacatgtttattatcccatgtgaagtttattacttatcaaagttagaaccccacctgcaacag |
38719560 |
T |
|
| Q |
122 |
tagtctaactacatttatctgcctgctgaccacagcagcaaataatgcattgcaatcaacattagcgtgaagaaatggctttgaagattgaagcagagtc |
221 |
Q |
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| T |
38719559 |
tagtctaactacatttatctgcctgctgaccacagcagcaaataatgcattgcaatcaacattagcgtgaagaaatggctttgaagattgaagcagagtc |
38719460 |
T |
|
| Q |
222 |
ctatccattgcattaacatccactccatgctgcaaacaaaaagtgtcagttagtaatcaattatattcataggtatttctttctgtctatagttgaacag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38719459 |
ctatccattgcattaacatccactccatgctgcaaacaaaaagtgtcatttagtaatcaattatattcataggtatttctttctgtctatagttgaacag |
38719360 |
T |
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| Q |
322 |
catttaccagaagttttaaagagaaaacacgtctcttattaaagaatatacgtaggggttaccaaattttggtgtagcaattttttcttct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38719359 |
catttaccagaagttttaaagagaaaacacgtctcttattaaagaatatacgtaggggttaccaaattttggtgtagccattttttcttct |
38719269 |
T |
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