View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21420_low_2 (Length: 412)

Name: NF21420_low_2
Description: NF21420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21420_low_2
NF21420_low_2
[»] chr2 (8 HSPs)
chr2 (144-219)||(39417205-39417280)
chr2 (279-353)||(39160426-39160500)
chr2 (279-353)||(39208694-39208768)
chr2 (279-353)||(39209958-39210032)
chr2 (279-353)||(39417071-39417145)
chr2 (279-350)||(39392365-39392436)
chr2 (292-353)||(39488755-39488815)
chr2 (299-350)||(39474951-39475002)
[»] chr5 (1 HSPs)
chr5 (300-340)||(33558970-33559010)


Alignment Details
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 39417280 - 39417205
Alignment:
Q  144 gtgttcaacaactcggatctctgtgtctcaccgtcgtcgccgtggatcacaaattgaactaattggtaaaaatctc 219  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  39417280 gtgttcaacaactcggaactctgtatctcaccgtcgtcggcgtggatcacaaactgaactaattggtaaaaatctc 39417205  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 39160426 - 39160500
Alignment:
Q  279 tcaacaaaatcagtatcatgcaatgttagacctactaaatctgtttttatatgttcaaacttgataaagtttaca 353  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||    
T  39160426 tcaacaaaatcaatatcatgcaatgttagacctactaaatgtgtttttatatgttcaaaccttatatagtttaca 39160500  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 39208768 - 39208694
Alignment:
Q  279 tcaacaaaatcagtatcatgcaatgttagacctactaaatctgtttttatatgttcaaacttgataaagtttaca 353  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||    
T  39208768 tcaacaaaatcaatatcatgcaatgttagacctactaaatgtgtttttatatgttcaaaccttatatagtttaca 39208694  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 39210032 - 39209958
Alignment:
Q  279 tcaacaaaatcagtatcatgcaatgttagacctactaaatctgtttttatatgttcaaacttgataaagtttaca 353  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||    
T  39210032 tcaacaaaatcaatatcatgcaatgttagacctactcaatgtgtttttatatgttcaaactttagaaagtttaca 39209958  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 39417145 - 39417071
Alignment:
Q  279 tcaacaaaatcagtatcatgcaatgttagacctactaaatctgtttttatatgttcaaacttgataaagtttaca 353  Q
    |||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  39417145 tcaataaaatcaatatcatgcaatgttagcgctactaaatctgtttttatatgttcaaactttataaagtttaca 39417071  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 350
Target Start/End: Complemental strand, 39392436 - 39392365
Alignment:
Q  279 tcaacaaaatcagtatcatgcaatgttagacctactaaatctgtttttatatgttcaaacttgataaagttt 350  Q
    |||||||||| | || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  39392436 tcaacaaaattaataccatgcaatgttagacctactaaatatgtttttatatgttcaaactttataaagttt 39392365  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 39488815 - 39488755
Alignment:
Q  292 tatcatgcaatgttagacctactaaatctgtttttatatgttcaaacttgataaagtttaca 353  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||| | ||||||||||    
T  39488815 tatcatgcaatgttagagctactgaatgtgtttttatatgttcaaacttta-aaagtttaca 39488755  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 39475002 - 39474951
Alignment:
Q  299 caatgttagacctactaaatctgtttttatatgttcaaacttgataaagttt 350  Q
    ||||||||||||| |||||| | ||||||||||||||||||| |||||||||    
T  39475002 caatgttagacctgctaaatgtctttttatatgttcaaactttataaagttt 39474951  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 33558970 - 33559010
Alignment:
Q  300 aatgttagacctactaaatctgtttttatatgttcaaactt 340  Q
    ||||||||| ||||||||| |||||||||||||| ||||||    
T  33558970 aatgttagagctactaaatgtgtttttatatgtttaaactt 33559010  T

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