View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21420_low_3 (Length: 388)
Name: NF21420_low_3
Description: NF21420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21420_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 4439633 - 4439993
Alignment:
| Q |
16 |
atcatttcagtataacaagttcaaaggtctcaattgaatttgtttcaaccaaaccaaccaaatgaagaactctgatagaaacttgttacattcttttatg |
115 |
Q |
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| T |
4439633 |
atcatttcagtataacaagttcaaaggtctcaattgaacttgtttcaaccaaaccaaccaaatgaagaactctgatagaaacttgttacattcttttatg |
4439732 |
T |
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| Q |
116 |
caaatgattttcattctttgtttgttatgtttcataacaagagttgaagcatcattacacaataaaatccctggcttttatgtgtttggagattccacag |
215 |
Q |
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| T |
4439733 |
caaatgattttcattctttgtttgttatgtttcataacaagagttgaagcatcattacacaataaaatccctggcttttatgtgtttggagattccacag |
4439832 |
T |
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| Q |
216 |
tagaccctggaaacaataactacataaaaacacttttcagaagcaattttcctccatatggcaaagatttttcaaaccaagttcctacaggaaggttcac |
315 |
Q |
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| T |
4439833 |
tagaccctggaaacaataactacataaaaacacttttcagaagcaattttccaccatatggcaaagatttttcaaaccaagttcctacaggaaggttcac |
4439932 |
T |
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| Q |
316 |
caatggaaaattagccactgattacattggtaattaatgattaaccagctactatgatatt |
376 |
Q |
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| T |
4439933 |
caatggaaaattagccactgattacattggtaattaatgattaaccagctactatgatatt |
4439993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 34641552 - 34641503
Alignment:
| Q |
194 |
tatgtgtttggagattccacagtagaccctggaaacaataactacataaa |
243 |
Q |
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| T |
34641552 |
tatgtgtttggagactccacagtagacccaggaaacaataactacataaa |
34641503 |
T |
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