View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21421_high_2 (Length: 273)
Name: NF21421_high_2
Description: NF21421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21421_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 51035676 - 51035938
Alignment:
| Q |
1 |
tgaccagaacagtgattccattatatataaatctgaatgaagtggtaggagcaataactaaagcaaagcaattaacacgtgaaaggaaaaaggaatttct |
100 |
Q |
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| T |
51035676 |
tgaccagaacagtgattccattatatataaatctgaatgaagtggtaggagcaataactaaagcaaagcaattaacacgtgaaaggaaaaaggaatttct |
51035775 |
T |
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| Q |
101 |
caaacaatacattataataccttcaaaaacaggctttatactgtcaactcgagcctgccacttatcattgtctatggcccatcgcaatcacagcatagcg |
200 |
Q |
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| T |
51035776 |
caaacaatacattataataccttcaaaaacaggctttatactgtcaactcgagcctgccacttatcattgtctatggcccatcgcaatcacagcatagcg |
51035875 |
T |
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| Q |
201 |
agtatcagcagttgcagcaaaccatgcatgcattcctgaatcaaagaatcatgtaagtgatga |
263 |
Q |
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| T |
51035876 |
agtatcagcagttgcagcaaaccatgcatgcattcctgaatcaaagaatcatgtaagtgatga |
51035938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 51043496 - 51043677
Alignment:
| Q |
7 |
gaacagtga-ttccattatatataaatctgaatgaagtggtaggagcaataactaaagcaaagcaattaacacgtgaaaggaaaaaggaatttctcaaac |
105 |
Q |
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| T |
51043496 |
gaacagtgacttccattttatataaatctaaatgaaatagtaggagcaataactaaagcaaagcaaaaaacacgtgaaat--acaagaaatttcagaaac |
51043593 |
T |
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| Q |
106 |
aatacattataataccttcaaaaacaggctttatactgtcaactcgagcctgccacttatcattgtctatggcccatcgcaatc |
189 |
Q |
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| T |
51043594 |
aatacatcatcgtaccttcaaaaactggcttaatactgtcaactcgagcctgccacttatcgttgtctatggcccatcgaaatc |
51043677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 51043787 - 51043865
Alignment:
| Q |
184 |
gcaatcacagcatagcgagtatcagcagttgcagcaaaccatgcatgcattcctgaatcaaagaatcatgtaagtgatg |
262 |
Q |
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|||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
51043787 |
gcaaccacagcatagcgagtatcaacagctgcagcaaaccatgcatgcattcctgaatcaaggaataatgtaagtgatg |
51043865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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