View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21421_high_3 (Length: 253)
Name: NF21421_high_3
Description: NF21421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21421_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 51035700 - 51035466
Alignment:
| Q |
1 |
tataatggaatcactgttctggtcatataacccagtaatcataccagttttagtgtattatgatttcataaatcaaagttaggatttcatatgtaatgtt |
100 |
Q |
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| T |
51035700 |
tataatggaatcactgttctggtcatataacccagtaatcataccagttttagtgtattatgatttcataaatcaaagttaggatttcatatgtaatgtt |
51035601 |
T |
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| Q |
101 |
caaacaatgtcttaaaagattaatgttctcatttacgatcagttatttataattatgatagactgcctatggaatcatatgatgaagttggaaaagtgta |
200 |
Q |
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| T |
51035600 |
caaacaatgtcttaaaagattaatgttctcatttacgatcagttatttataattatgatagactgcctatggaatcatatgatgaagttggaaaagtgta |
51035501 |
T |
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| Q |
201 |
tagaagggggttatgttatgatatgaatctcggtc |
235 |
Q |
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| T |
51035500 |
tagaagggggttatgttatgatatgaatctcggtc |
51035466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 51043452 - 51043398
Alignment:
| Q |
64 |
tttcataaatcaaagttaggatttcatatgtaatgttcaaacaatgtcttaaaaga |
119 |
Q |
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| T |
51043452 |
tttcataaattatagttaggatttcatatgtaatg-tcaatcaatttcttaaaaga |
51043398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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