View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21421_low_1 (Length: 356)
Name: NF21421_low_1
Description: NF21421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21421_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 161 - 339
Target Start/End: Original strand, 2718499 - 2718677
Alignment:
| Q |
161 |
tgagacatatgatataactgtattgaaaagatggtatccatacctcaaaccattatcaccaagaccatgcagccaaactatagttgcttgatgttttcct |
260 |
Q |
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| T |
2718499 |
tgagacatatgatataactgtattgaaaagatggtatccatacctcaaaccattatcaccaagaccatgcagccaaactatagttgcttgatgttttcct |
2718598 |
T |
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| Q |
261 |
ttaggcctcactacatgtgtcttaccaaactccaaattagttcttctagcagttccactaccttcaaagggcatataaa |
339 |
Q |
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| T |
2718599 |
ttaggcctcactacatgtgtcttaccaaactccaaattagttcttctagcagttccactaccttcaaagggcatataaa |
2718677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 2718314 - 2718456
Alignment:
| Q |
1 |
tttttccaacagaatttatcccaaatagaatctcaatagaaggaaataagatagacaaggtgtaggtcatgaccatattaaccacattttactgcaatat |
100 |
Q |
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| T |
2718314 |
tttttccaacagaatttatcccaaatagaatctcaatagaaggaaataagatagacaaggtgtaggccatgaccatattaaccacattttactgcaatat |
2718413 |
T |
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| Q |
101 |
aaaagtttacagcgtaacggccttaaaaacaatcgtgactgca |
143 |
Q |
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| T |
2718414 |
aaaagtttacagcgtaacggccttaaaaacaatcgtgactgca |
2718456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 44432082 - 44432000
Alignment:
| Q |
201 |
tacctcaaaccattatcaccaagaccatgcagccaaactatagttgcttgatgttttcctttaggcctcactacatgtgtctt |
283 |
Q |
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| T |
44432082 |
tacctcaaaccattatcaccaagtccatgcaaccaaactatagtagcttgatgttttcctttaggcctcactacatgtgtctt |
44432000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 23406427 - 23406493
Alignment:
| Q |
210 |
ccattatcaccaagaccatgcagccaaactatagttgcttgatgttttcctttaggcctcactacat |
276 |
Q |
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| T |
23406427 |
ccattatcaccgaggccgtgcaaccaaactatagttgcttggtgtttacctttaggcctgactacat |
23406493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 292
Target Start/End: Original strand, 49636951 - 49637044
Alignment:
| Q |
199 |
catacctcaaaccattatcaccaagaccatgcagccaaactatagttgcttgatgttttcctttaggcctcactacatgtgtcttaccaaactc |
292 |
Q |
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| T |
49636951 |
catacctcgagccgttatcgccaataccatgtagccaaacaatagttgcttgatgcttccctttaggtctaaccacatgagtccttccaaactc |
49637044 |
T |
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