View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21422_high_2 (Length: 538)

Name: NF21422_high_2
Description: NF21422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21422_high_2
NF21422_high_2
[»] chr3 (12 HSPs)
chr3 (153-230)||(19963848-19963925)
chr3 (153-222)||(20026499-20026568)
chr3 (150-230)||(19743090-19743167)
chr3 (283-352)||(19968382-19968451)
chr3 (159-223)||(20019687-20019751)
chr3 (252-354)||(20026617-20026719)
chr3 (150-230)||(19968523-19968606)
chr3 (283-352)||(20019830-20019899)
chr3 (265-347)||(19963682-19963764)
chr3 (150-230)||(14855678-14855761)
chr3 (464-521)||(19968144-19968201)
chr3 (283-341)||(14855833-14855891)
[»] chr6 (1 HSPs)
chr6 (56-105)||(10739482-10739531)
[»] chr2 (1 HSPs)
chr2 (151-199)||(3030813-3030861)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 19963925 - 19963848
Alignment:
Q  153 cttaccatttccaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 230  Q
    ||||| |||| |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  19963925 cttacgattttcaaccacttcatcatcggaacttgatagttcataaactaataaatgatcctctttatcagaagcttc 19963848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 20026499 - 20026568
Alignment:
Q  153 cttaccatttccaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatca 222  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  20026499 cttacgattttcaactacttcatcatcagaacttgatagttcataacctaataaatgatcctctttatca 20026568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 19743090 - 19743167
Alignment:
Q  150 agccttaccatttccaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   | ||  |||||||||||||||||| ||||    
T  19743090 agccttaccatttccaactacttcatcatcagaacttgatagttcataa---actatgtgatcctctttatcagaagcttc 19743167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 19968451 - 19968382
Alignment:
Q  283 tattgttatctccttcctcaattgattttgattgcttccaccagtcatagaatctagaagtaacatttgg 352  Q
    |||| ||||||||||||||| ||||||| ||||||| |||||| |||||| |||||||||||||||||||    
T  19968451 tattattatctccttcctcacttgatttcgattgctgccaccaatcatagtatctagaagtaacatttgg 19968382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 20019687 - 20019751
Alignment:
Q  159 atttccaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatcag 223  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||| |||||    
T  20019687 atttccaactacttcatcatcagaacttgatagttcataaactaatttgtgatcctcttcatcag 20019751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 354
Target Start/End: Original strand, 20026617 - 20026719
Alignment:
Q  252 gttatgccataatattcttcattttttattgtattgttatctccttcctcaattgattttgattgcttccaccagtcatagaatctagaagtaacatttg 351  Q
    |||| ||||||| ||||||||  ||||||| || |||||| |||||| ||  | ||| |||||||||||||||| |||||| |||||||||||||| |||    
T  20026617 gttaggccataagattcttcaacttttattctactgttatttccttcatccctagatattgattgcttccaccaatcatagtatctagaagtaacacttg 20026716  T
Q  352 gct 354  Q
    |||    
T  20026717 gct 20026719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 19968606 - 19968523
Alignment:
Q  150 agccttaccatttccaactacttcatcatca---gaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 230  Q
    ||||||||||||| |||||||||||||||||   ||||||||||||||||||| ||||   |||||||||| ||||||| ||||    
T  19968606 agccttaccattttcaactacttcatcatcatcagaacttgatagttcataaactaatttgtgatcctcttcatcagaagcttc 19968523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 20019830 - 20019899
Alignment:
Q  283 tattgttatctccttcctcaattgattttgattgcttccaccagtcatagaatctagaagtaacatttgg 352  Q
    |||| ||||||||||||||| |||||||  |||||| |||||| |||||| |||||||||||||||||||    
T  20019830 tattattatctccttcctcacttgatttcaattgctgccaccaatcatagtatctagaagtaacatttgg 20019899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 19963764 - 19963682
Alignment:
Q  265 attcttcattttttattgtattgttatctccttcctcaattgattttgattgcttccaccagtcatagaatctagaagtaaca 347  Q
    ||||||||  ||||||| |||||||||||||||| ||  ||||| |||||||||||||||| |||||| ||||| | ||||||    
T  19963764 attcttcaacttttattctattgttatctccttcatcccttgatattgattgcttccaccaatcatagtatctaaaggtaaca 19963682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 14855678 - 14855761
Alignment:
Q  150 agccttaccatttccaactacttcatcatca---gaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 230  Q
    |||| |||||||| |||||||||||||||||   ||||||||||||||||||| ||||   |||||||||| ||||||| ||||    
T  14855678 agccctaccattttcaactacttcatcatcatcggaacttgatagttcataaactaatttgtgatcctcttcatcagaagcttc 14855761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 464 - 521
Target Start/End: Complemental strand, 19968201 - 19968144
Alignment:
Q  464 acaaaccctcaaataacgagaaaacgacattaactcttcatcaaaactaggattatca 521  Q
    ||||||||||||| | ||||||||||||| |||||||||||| |||| ||||||||||    
T  19968201 acaaaccctcaaacatcgagaaaacgacactaactcttcatctaaacaaggattatca 19968144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 14855833 - 14855891
Alignment:
Q  283 tattgttatctccttcctcaattgattttgattgcttccaccagtcatagaatctagaa 341  Q
    |||| ||||||||||||||| ||||||| ||||||| |||||| |||||| ||||||||    
T  14855833 tattattatctccttcctcacttgatttcgattgctgccaccaatcatagtatctagaa 14855891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 10739482 - 10739531
Alignment:
Q  56 aacacaaaagccttagaatcaagcttgctgcaagataaagaagaggaaca 105  Q
    |||||||||| ||| |||||||||||||| | |||||||||||| |||||    
T  10739482 aacacaaaagacttggaatcaagcttgctactagataaagaagaagaaca 10739531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 3030861 - 3030813
Alignment:
Q  151 gccttaccatttccaactacttcatcatcagaacttgatagttcataaa 199  Q
    ||||| |||||| ||||| || ||||||||||||||||||| |||||||    
T  3030861 gccttgccattttcaactgctccatcatcagaacttgatagctcataaa 3030813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University