View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21422_high_3 (Length: 431)
Name: NF21422_high_3
Description: NF21422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21422_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 47760904 - 47760496
Alignment:
| Q |
18 |
attggagactgttggtgttggatcaagatcgaatgatgtagattcaaaaatcggaattttcatgtctaagtttgattaatatcttttaaaagtctagtat |
117 |
Q |
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| T |
47760904 |
attggagactgttggtgttggatcaagatcgaatgatgtagattcaaaaatcggaattttcatgtctaagtttgattaatatcttttaaaagtctagtat |
47760805 |
T |
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| Q |
118 |
gaaatctcctcagaaaaagaagaaagcctagtatacgttagcctatggaaagtctaatttaacatatgtttgaaacatcactcacatgacctttcccaca |
217 |
Q |
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| T |
47760804 |
gaaatctcctcagaaaaagaagaaagcctagtatatgttagcctatggaaagtctaatttaacatatgtttgaaacatcactcacatgacctttcccaca |
47760705 |
T |
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| Q |
218 |
aatttaatgatagaagactagaagcttggtctcaagccacatattttagtcaacaaatcatttcacgaatgtcaaactaaatgaccgactttcatatcca |
317 |
Q |
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| T |
47760704 |
aatttaatgatagaagactagaagcttggtctcaaaccacatattttagtcaacaaatcatttcacgaatgtcaaactaaatgaccgactttcatatcca |
47760605 |
T |
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| Q |
318 |
aattaaagcttcaatcctatatttgttggttacttgttaattattccaagacagagagcaatatcagcatggcaattgtttcttgcaagttattacttac |
417 |
Q |
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| T |
47760604 |
aattaaagcttcaatcctatatttgttggttacttgttaattattccaagacagagagcaatatcagcatggcaattgtttcttgcaagttattacttac |
47760505 |
T |
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| Q |
418 |
cttttattc |
426 |
Q |
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| T |
47760504 |
cttttattc |
47760496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 319
Target Start/End: Complemental strand, 47746403 - 47746270
Alignment:
| Q |
186 |
tttgaaacatcactcacatgacctttcccacaaatttaatgatagaagactagaagcttggtctcaagccacatattttagtcaacaaatcatttcacga |
285 |
Q |
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| T |
47746403 |
tttgaaacattactcaaacgacctttcacacaaatcgaatgataaaagactagaagctttgtctcaaaccacatattttactcaacaaatcatttcaccc |
47746304 |
T |
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| Q |
286 |
atgtcaaactaaatgaccgactttcatatccaaa |
319 |
Q |
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| T |
47746303 |
aattcaaattaactgattgactttcatatccaaa |
47746270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 426
Target Start/End: Complemental strand, 47718566 - 47718375
Alignment:
| Q |
231 |
aagactagaagcttggtctcaagccacatattttagtcaacaaatcatttcacgaatgtcaaactaaatgaccgactttcatatccaaattaaagcttca |
330 |
Q |
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| T |
47718566 |
aagactcgaagctttgtctcaaaccacatattttactcaacaaatcatttcacccagttcaaattaactgattgactttcatatcc-----aaagcttca |
47718472 |
T |
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| Q |
331 |
atcctatatttgttggttacttgttaattattccaagacagagagcaatat-ca-gcatggcaattgtttcttgcaagttattacttaccttttattc |
426 |
Q |
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| T |
47718471 |
atcctccatttcttaattacctgtt-cttgttccaagacagagatcaatatacacgaatgacaactgtttctagcaagctattattttccttttattc |
47718375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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