View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21422_high_7 (Length: 311)

Name: NF21422_high_7
Description: NF21422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21422_high_7
NF21422_high_7
[»] chr6 (8 HSPs)
chr6 (17-304)||(2671401-2671692)
chr6 (194-262)||(2593219-2593287)
chr6 (208-284)||(2635208-2635284)
chr6 (222-277)||(2566435-2566490)
chr6 (219-264)||(2595550-2595595)
chr6 (41-112)||(2568258-2568329)
chr6 (68-116)||(2593014-2593062)
chr6 (68-116)||(2634988-2635036)
[»] scaffold0103 (2 HSPs)
scaffold0103 (208-284)||(4725-4801)
scaffold0103 (68-116)||(4973-5021)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 2671692 - 2671401
Alignment:
Q  17 tttttgactatgtatagtcttttgtctctatatcatatatggttaaagttgtggctcctactttgaaaataaggggaattagggagatgacacttattga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  2671692 tttttgactatgtatagtcttttgtctctatatcatatatggttaaaattgtggctcctaccttgaaaataaggggagttagggagatgacacttattga 2671593  T
Q  117 ------tattaatattgttaat--gtcaattttgaagtacaatatttcctaattaacaatttaatgtaaaactttcttcgtccattataaccaagatgtt 208  Q
          ||||||||||||||||  ||||||||||||||| ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  2671592 aaattatattaatattgttaatatgtcaattttgaagtaaaatatttcctaa----caatttaatgtaaaactttcttcgtccattataaccaagatgtt 2671497  T
Q  209 atcaattctatttcaaatgattttcatacctcactctttggaaaattagttagaagccccaaagaatttttcaatctctctttgatatgatgatgt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||    
T  2671496 atcaattctatttcaaatgattttcatacctcactctttggaaaattagttagaagccccaaagaatttttcaatctctctctaatatgataatgt 2671401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 2593219 - 2593287
Alignment:
Q  194 tataaccaagatgttatcaattctatttcaaatgattttcatacctcactctttggaaaattagttaga 262  Q
    |||||||||| || |||||||| | |||||||||||||||||||||||  |||| ||||||||||||||    
T  2593219 tataaccaagttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttaga 2593287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 2635208 - 2635284
Alignment:
Q  208 tatcaattctatttcaaatgattttcatacctcactctttggaaaattagttagaagccccaaagaatttttcaatc 284  Q
    |||||||| | |||||||||||||||||||||||| |||||||| |||||||||| | | |||| || |||||||||    
T  2635208 tatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagacggcacaaataacttttcaatc 2635284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 2566435 - 2566490
Alignment:
Q  222 caaatgattttcatacctcactctttggaaaattagttagaagccccaaagaattt 277  Q
    |||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||    
T  2566435 caaatgattttcatacctcattctttggtaaattagttagaaggcacaaagaattt 2566490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 2595595 - 2595550
Alignment:
Q  219 tttcaaatgattttcatacctcactctttggaaaattagttagaag 264  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||    
T  2595595 tttcaaatgattttcataccttgctctttgggaaattagttagaag 2595550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 2568329 - 2568258
Alignment:
Q  41 tctctatatcatatatggttaaagttgtggctcctactttgaaaataaggggaattagggagatgacactta 112  Q
    |||| |||||||||||| ||||| |  ||||||| || |||| ||||| |||| ||||||||||||||||||    
T  2568329 tctcaatatcatatatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta 2568258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 2593014 - 2593062
Alignment:
Q  68 tggctcctactttgaaaataaggggaattagggagatgacacttattga 116  Q
    ||||||| || | ||||||||| ||| ||||||||||||||||||||||    
T  2593014 tggctcccacctagaaaataagcggagttagggagatgacacttattga 2593062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 2634988 - 2635036
Alignment:
Q  68 tggctcctactttgaaaataaggggaattagggagatgacacttattga 116  Q
    ||||||| || | ||||||||| ||| ||||||||||||||||||||||    
T  2634988 tggctcccacctagaaaataagcggagttagggagatgacacttattga 2635036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 4801 - 4725
Alignment:
Q  208 tatcaattctatttcaaatgattttcatacctcactctttggaaaattagttagaagccccaaagaatttttcaatc 284  Q
    |||||||| | |||||||||||||||||||||||| |||||||| |||||||||| | | |||| || |||||||||    
T  4801 tatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagacggcacaaataacttttcaatc 4725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 5021 - 4973
Alignment:
Q  68 tggctcctactttgaaaataaggggaattagggagatgacacttattga 116  Q
    ||||||| || | ||||||||| ||| ||||||||||||||||||||||    
T  5021 tggctcccacctagaaaataagcggagttagggagatgacacttattga 4973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University