View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21422_low_1 (Length: 615)
Name: NF21422_low_1
Description: NF21422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21422_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 149 - 607
Target Start/End: Original strand, 35288274 - 35288732
Alignment:
| Q |
149 |
gttttgtagggtctcaatgttacattcgagctattagtgatagagctgtagaatctacaatttctaagaaagaagaggagggagaacagtctcctaaaga |
248 |
Q |
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| T |
35288274 |
gttttgtagggtctcaatgttacattcgagctattagtgatagagctgtagaatctacaatttctaagaaagaagaggagggagaacagtctcctaaaga |
35288373 |
T |
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| Q |
249 |
ttggaagattaaaatgctatatgatggagattgtccattatgcatgcgagaggttaatctttgtttcaataacaattaacaagtgtggttgttttgttca |
348 |
Q |
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| T |
35288374 |
ttggaagattaaaatgctatatgatggagattgtccattatgcatgcgagaggttaatctttgtttcaataacaattaacaagtgtggttgttttgttca |
35288473 |
T |
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| Q |
349 |
taaccacataattctcatgttatatagttagttagtgaaccttgtttcatctcattcattgatagagttttttgctctttgttgttatttgtcattttag |
448 |
Q |
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| T |
35288474 |
taaccacataattctcatgttatatagttagttagtgaaccttgtttcatctcattcattgatagagtcttttgctctttgttgttatttgtcattttag |
35288573 |
T |
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| Q |
449 |
gtgaatatgctacgagagaggaacacgagttatggcaccatcaagtttgttgatataggctcagatgattactctcccgacgagaatcagggcctcgact |
548 |
Q |
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| T |
35288574 |
gtgaatatgctacgagagaggaacacgagttatggcaccatcaagtttgttgatataggctcagatgattactctcccgacgagaatcagggcctcgact |
35288673 |
T |
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| Q |
549 |
atcaaactgttagtcccttctctatggcctcgaagctgatttatttatttttggtttca |
607 |
Q |
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| T |
35288674 |
atcaaactgttagtcccttctctatggcctcgaagctgatttatttatttttgctttca |
35288732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 35287862 - 35287996
Alignment:
| Q |
1 |
agctccatcgtcttccacacgccaatgcttttccaccacttcctattcgcaaacctggtatcccttaatcgaatatcaattgttgtttttgtaattacta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
35287862 |
agctccatcgtcttccacacgccaatgcttttccaccacttcctattcgcaaacctggtatcccttaatcgaatatcaa---ttgtttttgtaattatta |
35287958 |
T |
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| Q |
101 |
ttaagtttaaatataattttagtcatgcaattataacg |
138 |
Q |
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| T |
35287959 |
ttaagtttaaatataattttagtcatgcaattataacg |
35287996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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