View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21422_low_10 (Length: 252)
Name: NF21422_low_10
Description: NF21422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21422_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 36170680 - 36170786
Alignment:
| Q |
1 |
ttaacaaaaggagggaatcagttcatgtgagcagagagctgcagaggaggaaaccaaagcagagttccaaggtaagagtacattctccaaagatggttac |
100 |
Q |
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| T |
36170680 |
ttaacaaaaggagggaatcagttcatgtgagcagagagctgcagaggaggaaaccaaagcagagttccaaggtaagagtacattctccaaagatggctac |
36170779 |
T |
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| Q |
101 |
taaggtt |
107 |
Q |
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||||||| |
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| T |
36170780 |
taaggtt |
36170786 |
T |
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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 36170857 - 36170912
Alignment:
| Q |
178 |
ttgtggaggaaacagacgaagggttagatagttttgctgttgtcaagtgttctttg |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170857 |
ttgtggaggaaacagacgaagggttagatagttttgctgttgtcaagtgttctttg |
36170912 |
T |
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