View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21422_low_8 (Length: 280)

Name: NF21422_low_8
Description: NF21422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21422_low_8
NF21422_low_8
[»] chr3 (1 HSPs)
chr3 (18-270)||(1282888-1283140)
[»] scaffold0199 (1 HSPs)
scaffold0199 (65-255)||(1228-1418)
[»] chr8 (2 HSPs)
chr8 (65-255)||(1675991-1676181)
chr8 (167-270)||(20862380-20862483)
[»] scaffold0288 (1 HSPs)
scaffold0288 (54-270)||(1908-2124)
[»] chr6 (28 HSPs)
chr6 (54-270)||(4618756-4618972)
chr6 (65-270)||(4603565-4603773)
chr6 (57-270)||(4594465-4594683)
chr6 (65-270)||(4565484-4565689)
chr6 (156-270)||(4507366-4507480)
chr6 (158-270)||(4513540-4513652)
chr6 (153-270)||(3173458-3173575)
chr6 (167-267)||(4558583-4558683)
chr6 (156-270)||(4462662-4462776)
chr6 (156-270)||(4471369-4471483)
chr6 (153-270)||(4482320-4482437)
chr6 (171-270)||(4258750-4258849)
chr6 (166-265)||(4612287-4612386)
chr6 (171-270)||(4627605-4627704)
chr6 (171-270)||(4623762-4623861)
chr6 (167-267)||(4572424-4572524)
chr6 (171-270)||(4517795-4517894)
chr6 (171-257)||(4255395-4255481)
chr6 (156-270)||(4265616-4265730)
chr6 (188-270)||(4569525-4569607)
chr6 (166-270)||(4587087-4587191)
chr6 (171-270)||(4575910-4576009)
chr6 (189-270)||(4488789-4488870)
chr6 (171-270)||(4581469-4581568)
chr6 (202-251)||(4497850-4497899)
chr6 (167-268)||(4599620-4599721)
chr6 (167-215)||(4493415-4493463)
chr6 (156-215)||(4472616-4472675)
[»] scaffold0475 (1 HSPs)
scaffold0475 (156-270)||(2279-2393)
[»] chr7 (1 HSPs)
chr7 (171-270)||(3088200-3088299)
[»] chr5 (1 HSPs)
chr5 (174-268)||(24104552-24104646)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 1283140 - 1282888
Alignment:
Q  18 tttagaacctcctagatttgatctgtttggaccacttccttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcaca 117  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  1283140 tttagaacctcctagattttatctgtttgaacctcttccttttttgttctctattaaagcacatgcttatcacttgtttctcaacctcatatcttgcacg 1283041  T
Q  118 cataacatccaagtagagaattatcaaaaatggtaaactttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatcc 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1283040 cataacatccaagtagagaattatcaaaaatggtcaactttgcaaacacaaaaccacatgctgtgttgattccatatccagctcaaggccatatcaatcc 1282941  T
Q  218 attgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1282940 attgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 1282888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 1418 - 1228
Alignment:
Q  65 tctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgcaaac 164  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  1418 tctctattaaagcacatgcttatcacttgtttctcaacctcatatcttgcacacataacatccaaatagataattatcaaaaatgggaaactttgcaaac 1319  T
Q  165 acaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 255  Q
    | |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  1318 agaaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggct 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 1676181 - 1675991
Alignment:
Q  65 tctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgcaaac 164  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  1676181 tctctattaaagcacatgcttatcacttgtttctcaacctcatatcttgcacacataacatccaaatagataattatcaaaaatgggaaactttgcaaac 1676082  T
Q  165 acaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 255  Q
    | |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  1676081 agaaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggct 1675991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 167 - 270
Target Start/End: Original strand, 20862380 - 20862483
Alignment:
Q  167 aaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc 266  Q
    |||||||||||| ||| | | ||||||||||  |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||     
T  20862380 aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca 20862479  T
Q  267 tttg 270  Q
    ||||    
T  20862480 tttg 20862483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 54 - 270
Target Start/End: Original strand, 1908 - 2124
Alignment:
Q  54 tccttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaa 153  Q
    ||||||||| |  |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||  | ||||||||||||||||| ||    
T  1908 tccttttttttcttctattaaagcacatgcttatcacttgtttctcaacctcataacttgcaaacataacatcaaaagatagaattatcaaaaatgggaa 2007  T
Q  154 actttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagagg 253  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  2008 actttgcaaacagaaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagagg 2107  T
Q  254 cttttacataacctttg 270  Q
    |||| ||||||||||||    
T  2108 ctttcacataacctttg 2124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 54 - 270
Target Start/End: Complemental strand, 4618972 - 4618756
Alignment:
Q  54 tccttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaa 153  Q
    ||||||||| |  |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||  | ||||||||||||||||| ||    
T  4618972 tccttttttttcttctattaaagcacatgcttatcacttgtttctcaacctcataacttgcaaacataacatcaaaagatagaattatcaaaaatgggaa 4618873  T
Q  154 actttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagagg 253  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  4618872 actttgcaaacagaaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagagg 4618773  T
Q  254 cttttacataacctttg 270  Q
    |||| ||||||||||||    
T  4618772 ctttcacataacctttg 4618756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 65 - 270
Target Start/End: Complemental strand, 4603773 - 4603565
Alignment:
Q  65 tctctattaaagcacatgcttat---cacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgca 161  Q
    |||||||||| ||||||||||||   ||||| ||  |||||||||||| |||||||||||| |||||| |||| ||||| | ||||||| ||||||||||    
T  4603773 tctctattaatgcacatgcttattatcacttgttcttcaacctcatattttgcacacataatatccaaatagaaaattaactaaaatgggaaactttgca 4603674  T
Q  162 aacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttaca 261  Q
    |||| ||||| |||||||||| ||||||||||||||  ||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||| |||    
T  4603673 aacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcaca 4603574  T
Q  262 taacctttg 270  Q
    |||||||||    
T  4603573 taacctttg 4603565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 57 - 270
Target Start/End: Complemental strand, 4594683 - 4594465
Alignment:
Q  57 ttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataaca------tccaagtagagaattatcaaaaatgg 150  Q
    |||||| |||||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||      | ||| ||||||||||||||| ||||    
T  4594683 tttttttttctctattaaagcccatgtttatcacttgtttctcaacctcgtatcttgcacacataacaataacattcaa-tagagaattatcaaagatgg 4594585  T
Q  151 taaactttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttag 250  Q
     |||||||||||||| |||||||||||||||| ||||||||  ||||  |||||| ||||| ||||||||||||||||| |||||||| |||||||||||    
T  4594584 gaaactttgcaaacagaaaaccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttag 4594485  T
Q  251 aggcttttacataacctttg 270  Q
    ||| ||| ||||||||||||    
T  4594484 aggatttcacataacctttg 4594465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 65 - 270
Target Start/End: Complemental strand, 4565689 - 4565484
Alignment:
Q  65 tctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgcaaac 164  Q
    ||||||| ||||||||||| |||||||| ||| |||||||||||||||||||| ||||||| |||  ||| || | ||||| |||| ||  |||||||||    
T  4565689 tctctataaaagcacatgcctatcacttgtttttcaacctcatatcttgcacaaataacatacaaacagaaaaatttcaaagatgggaagttttgcaaac 4565590  T
Q  165 acaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataa 264  Q
    | |||||||||||||||| ||||||||  ||||  |||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| ||| | ||||    
T  4565589 agaaaaccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataa 4565490  T
Q  265 cctttg 270  Q
    ||||||    
T  4565489 cctttg 4565484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 4507480 - 4507366
Alignment:
Q  156 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 255  Q
    |||||||| | |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || || ||||||||| ||||||    
T  4507480 tttgcaaagagaaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggct 4507381  T
Q  256 tttacataacctttg 270  Q
    || ||||||||||||    
T  4507380 ttcacataacctttg 4507366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 158 - 270
Target Start/End: Original strand, 4513540 - 4513652
Alignment:
Q  158 tgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttt 257  Q
    ||||| || |||||||||||||||| ||||||||||||||  ||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  4513540 tgcaagcagaaaaccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggcttt 4513639  T
Q  258 tacataacctttg 270  Q
     ||||||||||||    
T  4513640 cacataacctttg 4513652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 153 - 270
Target Start/End: Complemental strand, 3173575 - 3173458
Alignment:
Q  153 aactttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagag 252  Q
    ||||||||||| | |||||||||||| ||| | | ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  3173575 aactttgcaaagagaaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagag 3173476  T
Q  253 gcttttacataacctttg 270  Q
    ||||| ||||||||||||    
T  3173475 gctttcacataacctttg 3173458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 4558683 - 4558583
Alignment:
Q  167 aaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc 266  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| ||||||||    
T  4558683 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggatttcacataacc 4558584  T
Q  267 t 267  Q
    |    
T  4558583 t 4558583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 4462776 - 4462662
Alignment:
Q  156 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 255  Q
    |||||||| ||||| |||||||||||| ||||||||| |||| | ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |    
T  4462776 tttgcaaagacaaagccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggtt 4462677  T
Q  256 tttacataacctttg 270  Q
    || ||||||||||||    
T  4462676 ttcacataacctttg 4462662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 4471483 - 4471369
Alignment:
Q  156 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 255  Q
    |||||||| ||||| |||||||||||  ||||||||| |||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||    
T  4471483 tttgcaaagacaaagccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggct 4471384  T
Q  256 tttacataacctttg 270  Q
    || ||||||| ||||    
T  4471383 ttcacataacgtttg 4471369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 153 - 270
Target Start/End: Complemental strand, 4482437 - 4482320
Alignment:
Q  153 aactttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagag 252  Q
    ||||||||| | | |||||||||||| ||| ||| ||||| |||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||    
T  4482437 aactttgcagaaaaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagag 4482338  T
Q  253 gcttttacataacctttg 270  Q
    ||||| ||||||||||||    
T  4482337 gctttcacataacctttg 4482320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 270
Target Start/End: Original strand, 4258750 - 4258849
Alignment:
Q  171 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 270  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| ||| ||| ||| ||||||||||||    
T  4258750 ccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacataacctttg 4258849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 4612287 - 4612386
Alignment:
Q  166 caaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataac 265  Q
    ||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||    
T  4612287 caaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataac 4612386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 4627704 - 4627605
Alignment:
Q  171 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 270  Q
    |||||||||||| ||||||||| ||||  |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||||||||    
T  4627704 ccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttg 4627605  T

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Target: chr6; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 4623861 - 4623762
Alignment:
Q  171 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 270  Q
    |||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||| || ||| |||||| ||||||| ||||||||||||    
T  4623861 ccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacataacctttg 4623762  T

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Target: chr6; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 4572524 - 4572424
Alignment:
Q  167 aaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc 266  Q
    |||||||||||||||| | || |||||||||| ||||||||||||||||||||||||  ||||||||||| | |||||||||||||| ||| ||||||||    
T  4572524 aaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggttttcacataacc 4572425  T
Q  267 t 267  Q
    |    
T  4572424 t 4572424  T

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Target: chr6; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 4517894 - 4517795
Alignment:
Q  171 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 270  Q
    |||||||| ||||| | ||||||||||  |||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||| ||||||||||||    
T  4517894 ccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttg 4517795  T

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Target: chr6; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 4255395 - 4255481
Alignment:
Q  171 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttt 257  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||||    
T  4255395 ccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaaggcttt 4255481  T

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Target: chr6; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 270
Target Start/End: Original strand, 4265616 - 4265730
Alignment:
Q  156 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 255  Q
    ||||||||  |||| |||||||||||| ||||||||  ||||  |||||||||||||||| |||||||||| |||| ||| || ||||||||||||||||    
T  4265616 tttgcaaagccaaagccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggct 4265715  T
Q  256 tttacataacctttg 270  Q
    || ||||||||||||    
T  4265716 ttcacataacctttg 4265730  T

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Target: chr6; HSP #20
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 4569607 - 4569525
Alignment:
Q  188 tccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 270  Q
    ||||||||||  ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||||||||    
T  4569607 tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttg 4569525  T

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Target: chr6; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 4587191 - 4587087
Alignment:
Q  166 caaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataac 265  Q
    ||||||| ||||||||| | || |||| ||||| |||||||||||||||||||||||| |||||||| ||||| ||||||||| |||| ||| |||||||    
T  4587191 caaaacctcatgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataac 4587092  T
Q  266 ctttg 270  Q
    |||||    
T  4587091 ctttg 4587087  T

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Target: chr6; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 4576009 - 4575910
Alignment:
Q  171 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 270  Q
    |||||||| ||| | | ||||| ||||| |||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||    
T  4576009 ccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataacctttg 4575910  T

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Target: chr6; HSP #23
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 4488789 - 4488870
Alignment:
Q  189 ccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 270  Q
    |||| ||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  4488789 ccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttg 4488870  T

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Target: chr6; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 4581568 - 4581469
Alignment:
Q  171 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 270  Q
    |||||||| ||| ||||||||||||||  |||||| ||||||| ||||||  | | ||||||||| || |||||||||||||||||| ||||||||||||    
T  4581568 ccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 4581469  T

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Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 4497850 - 4497899
Alignment:
Q  202 aaggccatatcaatccattgttcaaactagcaaaactacttcaccttaga 251  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  4497850 aaggccatatcaatccattgttgaaactaggaaaattacttcaccttaga 4497899  T

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Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 268
Target Start/End: Complemental strand, 4599721 - 4599620
Alignment:
Q  167 aaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc 266  Q
    ||||| |||||| ||  |||||||||  |||  ||||||  ||||||||| |||  |||||||||||||  | |||||||||||||| ||||||||||||    
T  4599721 aaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaactagcaaagattcttcaccttagaggattttacataacc 4599622  T
Q  267 tt 268  Q
    ||    
T  4599621 tt 4599620  T

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Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 4493463 - 4493415
Alignment:
Q  167 aaaaccacatgctgtgatgattccatatccagctcaaggccatatcaat 215  Q
    |||||||||||| ||| ||||||||| |||||||||||| |||||||||    
T  4493463 aaaaccacatgcagtgttgattccatttccagctcaaggtcatatcaat 4493415  T

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Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 4472675 - 4472616
Alignment:
Q  156 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaat 215  Q
    |||||||  |||||||||||||| ||| ||||||||| |||| | |||||||||||||||    
T  4472675 tttgcaatgacaaaaccacatgcagtgttgattccatgtccaccccaaggccatatcaat 4472616  T

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Target: scaffold0475 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 2393 - 2279
Alignment:
Q  156 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 255  Q
    |||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  2393 tttgcaaacaaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggct 2294  T
Q  256 tttacataacctttg 270  Q
    || ||||||||||||    
T  2293 ttcacataacctttg 2279  T

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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 3088299 - 3088200
Alignment:
Q  171 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 270  Q
    |||||||||||| ||||||||||||||  |||||| ||||| ||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||    
T  3088299 ccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcacataacctttg 3088200  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 24104646 - 24104552
Alignment:
Q  174 catgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctt 268  Q
    ||||||||| ||||||||  ||||  |||||| ||||||||| ||||||||||||||| ||| || |||||||||||||||||| ||||||||||    
T  24104646 catgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataacctt 24104552  T

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