View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21422_low_9 (Length: 255)
Name: NF21422_low_9
Description: NF21422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21422_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40060469 - 40060689
Alignment:
| Q |
1 |
tggtttaagaatggaaaatatatgaaaaacagtgggacatccaaatccaaaaacctatccaccat-aaaatttcaagacaaaggcacacatttccaaacg |
99 |
Q |
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| T |
40060469 |
tggtttaagaatggaaaatatatgaaaaacagtgggacatccaaatccaaaaacctatccaccatcaaaatttcaaggcaaaggcacacatttccaaacc |
40060568 |
T |
|
| Q |
100 |
aggtagacataaggaaaatggttcaatgaaatattttaaacaaacaaaatagcatgattttataatggattaacagttgggtaattactaaggtccagat |
199 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |
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| T |
40060569 |
aggaagacataaggaaaatggttcaatgaaattttttaaacaaacaaaatagcatgattttataatggatcaacagttgggta---actaaggtctagat |
40060665 |
T |
|
| Q |
200 |
gcatacaacatttaacacaaaacc |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
40060666 |
gcatacaacatttaacacaaaacc |
40060689 |
T |
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