View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21423_high_1 (Length: 524)
Name: NF21423_high_1
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21423_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Complemental strand, 26422542 - 26422043
Alignment:
| Q |
19 |
ctagcatcttttgtctgttaaagttatattatgataggaaccccatgcacgaaaaagataaaaagtgtataactaattgatggccatcatcaaaattccc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422542 |
ctagcatcttttgtctgttaaagttatattatgataggaaccccatgcacgaaaaagataaaaagtgtataactaattgatggccatcatcaaaattccc |
26422443 |
T |
|
| Q |
119 |
gcaaaacctgaagtaaagctcctcactcagaaaaaatttgtgcccatcatcaaaattccagcaactgactcctcccacttgacaccactattctcatatc |
218 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26422442 |
gcaaaacctgaagtaaagctcctcactcagaagaaatttgtgcccatcatcaaaattcccgcaactgactcctcccacttgacaccactattctcatatc |
26422343 |
T |
|
| Q |
219 |
gcccttttcaattttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagttcttttttatccctaaaatatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422342 |
gcccttttcaattttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagttcttttttatccctaaaatatt |
26422243 |
T |
|
| Q |
319 |
aatctttccctgaatgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagcatcttctcatatagtctcttct |
418 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422242 |
aatctgtccctgaatgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagcatcttctcatatagtctcttct |
26422143 |
T |
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| Q |
419 |
atgaattgtctttcttaatgaataactaacttaggtgttttctccccctgttccacgatatttccagtaatcaattcttttaatgtcattccacacctat |
518 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
26422142 |
atgaattgtctttctcaatgaataactaactta---gttttctccccctgttccacaatatttccagtaatcaattcttttaatgttattccacacctgt |
26422046 |
T |
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