View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21423_high_15 (Length: 289)

Name: NF21423_high_15
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21423_high_15
NF21423_high_15
[»] chr3 (9 HSPs)
chr3 (19-279)||(5374881-5375141)
chr3 (19-168)||(5363111-5363260)
chr3 (19-168)||(5368327-5368476)
chr3 (19-180)||(5369139-5369306)
chr3 (19-181)||(5356466-5356631)
chr3 (208-248)||(5363276-5363316)
chr3 (211-248)||(5368495-5368532)
chr3 (98-159)||(7126688-7126749)
chr3 (91-167)||(7178718-7178794)
[»] chr6 (2 HSPs)
chr6 (92-159)||(33839541-33839608)
chr6 (99-159)||(33843461-33843521)
[»] chr8 (1 HSPs)
chr8 (74-163)||(30054498-30054587)
[»] chr7 (1 HSPs)
chr7 (94-159)||(44500709-44500774)
[»] chr4 (1 HSPs)
chr4 (98-159)||(36590659-36590720)
[»] scaffold0210 (1 HSPs)
scaffold0210 (99-159)||(15608-15668)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 5374881 - 5375141
Alignment:
Q  19 ccatccttgttctattacacacttatacattgatgtagaagacatcagatgggtcgaagaggattctgcaaccctattcagctggctgctagagcttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5374881 ccatccttgttctattacacacttatacattgatgtagaagacatcagatgggtcgaagaggattctgcaaccctattcagctggctgctagagcttgct 5374980  T
Q  119 aatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttatattttgttcttcaattgcttgtattttccgtttctttat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5374981 aatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttatattttgttcttcaattgcttgtatttttcgtttctttat 5375080  T
Q  219 atataaattttgtctaaaatatataactatccttctttccttcgataggttctctcctttg 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375081 atataaattttgtctaaaatatataactatccttctttccttcgataggttctctcctttg 5375141  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 5363111 - 5363260
Alignment:
Q  19 ccatccttgttctattacacacttatacattgatgtagaagacatcagatgggtcgaagaggattctgcaaccctattcagctggctgctagagcttgct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  5363111 ccatccttgttctattacacacttatacattgatgtagaagacatcagctgggtcgaagaggattctgcaaccctactcagctggctgcttgagcttgct 5363210  T
Q  119 aatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5363211 aatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 5363260  T

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Target: chr3; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 5368327 - 5368476
Alignment:
Q  19 ccatccttgttctattacacacttatacattgatgtagaagacatcagatgggtcgaagaggattctgcaaccctattcagctggctgctagagcttgct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  5368327 ccatccttgttctattacacacttatacattgatgtagaagacatcagctgggtcgaagaggattctgcaaccctactcagctggctgctcgagcttgct 5368426  T
Q  119 aatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5368427 aatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 5368476  T

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Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 5369139 - 5369306
Alignment:
Q  19 ccatccttgttctattacacacttatacattgatgtagaagacatca---gatgggtcgaagaggattctgcaaccctatt---cagctggctgctagag 112  Q
    |||||||||||||||||||||||||| |||| ||| |||||||||||   | |  ||| ||||||||||||||  |||| |   ||||||||||| ||||    
T  5369139 ccatccttgttctattacacacttatgcattcatgcagaagacatcatcggcttcgtcaaagaggattctgcagtcctactgatcagctggctgcaagag 5369238  T
Q  113 cttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttata 180  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  5369239 cttgctaatatcaaatcattgacagtctcttctaatactcttcaggttttgaggccgttatatttata 5369306  T

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Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 5356466 - 5356631
Alignment:
Q  19 ccatccttgttctattacacacttatacattgatgtagaagacatca---gatgggtcgaagaggattctgcaaccctattcagctggctgctagagctt 115  Q
    |||||||||||||||||||||||||||  || ||| ||||||||||    | |  ||| ||||||||||||||  |||| ||||||||||||||||||||    
T  5356466 ccatccttgttctattacacacttatatgttaatgcagaagacatcgtcggcttcgtcaaagaggattctgcagtcctactcagctggctgctagagctt 5356565  T
Q  116 gctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttatat 181  Q
    || ||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||||||    
T  5356566 gccaatataaaatcattgacagtctcttctaatactcttcaggttttgaggctgctatatttatat 5356631  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 5363276 - 5363316
Alignment:
Q  208 cgtttctttatatataaattttgtctaaaatatataactat 248  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  5363276 cgtttctttatatataaattttgtctaaaatgtataactat 5363316  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 5368495 - 5368532
Alignment:
Q  211 ttctttatatataaattttgtctaaaatatataactat 248  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  5368495 ttctttatatataaatttggtctaaaatgtataactat 5368532  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 7126688 - 7126749
Alignment:
Q  98 agctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 159  Q
    |||||| ||| |||||||||| ||| |||| |||| || |||||||| ||||||||||||||    
T  7126688 agctggttgcaagagcttgctgataccaaaacattgaccgtctcttcgaatactcttcaggt 7126749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 7178718 - 7178794
Alignment:
Q  91 cctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggc 167  Q
    |||| ||| |||||| || ||| |||||||||||| |||||| ||  |||||| || ||||||||||||||| ||||    
T  7178718 cctactcaactggcttctcgagtttgctaatatcacatcattgacgatctcttatagtactcttcaggttttaaggc 7178794  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 33839608 - 33839541
Alignment:
Q  92 ctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 159  Q
    |||||||||||||||||||| |||||||| ||  ||||||||||||||||||| | ||||||||||||    
T  33839608 ctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggt 33839541  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 33843521 - 33843461
Alignment:
Q  99 gctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 159  Q
    ||||||||||||| ||||||||  |  |||||||||||||| |||| || |||||||||||    
T  33843521 gctggctgctagaccttgctaacttagaatcattaacagtcacttcaaaaactcttcaggt 33843461  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 30054587 - 30054498
Alignment:
Q  74 gaagaggattctgcaaccctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttg 163  Q
    ||||| || ||||||  |||| ||| |||||| ||| || || |||||||||||||||| || ||||||||| |||||||||||||||||    
T  30054587 gaagacgaatctgcagtcctactcaactggctactacagttttctaatatcaaatcattgactgtctcttctgatactcttcaggttttg 30054498  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 44500774 - 44500709
Alignment:
Q  94 attcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 159  Q
    |||||||||||| |||||||||||||| || |||||||| || |||||| | | ||||||||||||    
T  44500774 attcagctggctactagagcttgctaacataaaatcattgacggtctctacaactactcttcaggt 44500709  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 36590720 - 36590659
Alignment:
Q  98 agctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 159  Q
    ||||||||| |||| |||||||||||||||||||| || |||||| | | ||||||||||||    
T  36590720 agctggctgttagaacttgctaatatcaaatcattgacggtctctgcgagtactcttcaggt 36590659  T

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Target: scaffold0210 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 15668 - 15608
Alignment:
Q  99 gctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 159  Q
    |||||||| | |||||  |||||||||||||||| |||||| |||| | ||||||||||||    
T  15668 gctggctggtcgagctcactaatatcaaatcattgacagtcccttcaagtactcttcaggt 15608  T

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