View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21423_high_18 (Length: 266)
Name: NF21423_high_18
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21423_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 15036661 - 15036425
Alignment:
| Q |
11 |
cacagatataataatcaatattgttgctgcaatccctccaactgaagattacaatcgaagttctaatgaggatatgacaagttgtaaaatttaaaaacag |
110 |
Q |
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| T |
15036661 |
cacagatataataatcaatattgttgctgcaatccctccaactgaagattacaatcgaagttctaatgaggatatgacaagttgtaaaatttaaaaacag |
15036562 |
T |
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| Q |
111 |
aaatattcacttttagaatttagagaacctgatagatacgagattactcggagatccttcaaccaaacagtgggtagaataactaatgcagtcagaactc |
210 |
Q |
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| T |
15036561 |
aaatattcacttttagaatatagagaacctgatagatacgagattactcggagatccttcaaccaaacagtgggtagaataactaatgcagtcagaactc |
15036462 |
T |
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| Q |
211 |
caaacaagtgcatggaatctaaatggagaccgcctat |
247 |
Q |
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| T |
15036461 |
caaacaagtgcatggaatctaaatggagaccgcctat |
15036425 |
T |
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Back To:
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 35236543 - 35236606
Alignment:
| Q |
129 |
tttagagaacctgatagatacgagattactcggagatccttcaaccaaacagtgggtagaataa |
192 |
Q |
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| T |
35236543 |
tttagagaacctgagagataggagattatacgaagatccttcaaccaaacagtagggagaataa |
35236606 |
T |
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