View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21423_high_7 (Length: 372)
Name: NF21423_high_7
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21423_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 36281955 - 36282300
Alignment:
| Q |
10 |
catcatcaattgttgaatataagttctgaatattttcaataacggtataaatggttaaaaccttccttaactaaacatattcatggtaatgttgctgatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36281955 |
catcatcaattgttgaatataagttctgaatattttcaataacggtataa-tggttaaaaccttccttaactaaacatattcatggtaatgttgctgatt |
36282053 |
T |
|
| Q |
110 |
ataaggataatttaaggaagagtttggagtataaaggtattccactcacaaattgacaaccacaacaaaaactcagactaagtggtggtgtcttgaggtc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36282054 |
ataaggataatttaaggaagagtttggagtataaaggtattccactcacaaattgacaaccacaacaaaaactcagactaagtggtggtgtcttgaggtc |
36282153 |
T |
|
| Q |
210 |
atttcatataaaagaagaatcatatgcaaatggatcgtacattttgataatgaataaaagaacactagttgaatgtagtgaaaggcatgagcaatgaaat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36282154 |
atttcatataaaagaagaatcatatgcaaatggatcgtacattttgataatgaataaaagaacactagttgaatgtagtgaaaggcatgagcaatgaaat |
36282253 |
T |
|
| Q |
310 |
taaattatgctttaatcacttactaagtagtgtcacttagtaattat |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36282254 |
taaattatgctttaatcacttactaagtagtgtcacttagtaattat |
36282300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University