View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21423_high_8 (Length: 361)

Name: NF21423_high_8
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21423_high_8
NF21423_high_8
[»] chr6 (66 HSPs)
chr6 (17-270)||(28141044-28141297)
chr6 (263-361)||(28140938-28141036)
chr6 (85-224)||(29827541-29827680)
chr6 (85-224)||(2186369-2186508)
chr6 (97-224)||(28096952-28097079)
chr6 (97-227)||(28150724-28150854)
chr6 (87-223)||(29469759-29469895)
chr6 (133-222)||(26624816-26624905)
chr6 (133-222)||(26730793-26730882)
chr6 (98-225)||(29758956-29759083)
chr6 (98-224)||(28296241-28296367)
chr6 (98-224)||(28515706-28515832)
chr6 (99-224)||(26863123-26863248)
chr6 (119-224)||(28186955-28187060)
chr6 (133-225)||(26885633-26885725)
chr6 (141-224)||(26960677-26960760)
chr6 (132-227)||(27529845-27529940)
chr6 (134-225)||(27680513-27680604)
chr6 (153-224)||(27697148-27697219)
chr6 (98-225)||(29673519-29673646)
chr6 (153-223)||(26850277-26850347)
chr6 (168-229)||(25484603-25484664)
chr6 (168-229)||(26144412-26144473)
chr6 (87-222)||(28902153-28902288)
chr6 (153-224)||(29842548-29842619)
chr6 (153-223)||(27591574-27591644)
chr6 (153-223)||(27676173-27676243)
chr6 (153-227)||(27704822-27704896)
chr6 (156-218)||(31286114-31286176)
chr6 (168-229)||(25512435-25512496)
chr6 (166-223)||(26637193-26637250)
chr6 (166-223)||(26743159-26743216)
chr6 (98-218)||(26938581-26938701)
chr6 (87-227)||(27215998-27216138)
chr6 (100-220)||(28327037-28327157)
chr6 (100-220)||(28504673-28504793)
chr6 (153-225)||(28787804-28787876)
chr6 (153-225)||(28793925-28793997)
chr6 (85-216)||(26804018-26804149)
chr6 (134-225)||(29694932-29695023)
chr6 (153-223)||(25075432-25075502)
chr6 (168-222)||(25581273-25581327)
chr6 (107-225)||(26657525-26657643)
chr6 (107-225)||(26763496-26763614)
chr6 (165-223)||(26813102-26813160)
chr6 (153-223)||(27603254-27603324)
chr6 (153-227)||(27609679-27609753)
chr6 (153-227)||(27717058-27717132)
chr6 (131-209)||(29476608-29476686)
chr6 (168-225)||(25546531-25546588)
chr6 (168-225)||(26057470-26057527)
chr6 (168-225)||(26077440-26077497)
chr6 (167-224)||(26951295-26951352)
chr6 (156-227)||(26825374-26825445)
chr6 (153-220)||(27663762-27663829)
chr6 (263-354)||(28097131-28097222)
chr6 (166-220)||(25491879-25491933)
chr6 (153-227)||(26648019-26648093)
chr6 (153-227)||(26753987-26754061)
chr6 (132-210)||(29523458-29523536)
chr6 (167-220)||(26978936-26978989)
chr6 (141-222)||(28490040-28490121)
chr6 (141-222)||(29802450-29802531)
chr6 (263-358)||(29842676-29842771)
chr6 (89-219)||(29727451-29727581)
chr6 (165-225)||(27426186-27426246)
[»] chr1 (4 HSPs)
chr1 (98-224)||(26137434-26137560)
chr1 (98-220)||(5921979-5922101)
chr1 (133-225)||(266888-266980)
chr1 (153-226)||(28126243-28126316)
[»] chr5 (1 HSPs)
chr5 (87-227)||(16692410-16692550)
[»] chr2 (2 HSPs)
chr2 (98-226)||(17991704-17991832)
chr2 (123-214)||(3281218-3281309)
[»] scaffold0019 (1 HSPs)
scaffold0019 (98-224)||(56795-56921)
[»] chr8 (6 HSPs)
chr8 (98-225)||(12590286-12590413)
chr8 (87-224)||(16371627-16371764)
chr8 (134-224)||(16441599-16441689)
chr8 (102-216)||(35984859-35984973)
chr8 (88-216)||(31906614-31906742)
chr8 (98-220)||(16450445-16450567)
[»] scaffold0573 (1 HSPs)
scaffold0573 (87-222)||(7506-7641)
[»] chr3 (1 HSPs)
chr3 (98-225)||(615341-615468)
[»] scaffold1870 (1 HSPs)
scaffold1870 (156-225)||(332-401)
[»] scaffold0419 (1 HSPs)
scaffold0419 (156-225)||(9050-9119)
[»] scaffold0277 (2 HSPs)
scaffold0277 (133-222)||(3242-3331)
scaffold0277 (133-222)||(12205-12294)
[»] chr4 (9 HSPs)
chr4 (154-223)||(18688179-18688248)
chr4 (154-225)||(18730060-18730131)
chr4 (154-223)||(18678122-18678191)
chr4 (154-223)||(18697965-18698034)
chr4 (154-223)||(18722635-18722704)
chr4 (266-357)||(5089635-5089726)
chr4 (154-223)||(18654042-18654111)
chr4 (168-224)||(5089533-5089589)
chr4 (165-225)||(18075309-18075369)
[»] scaffold0012 (2 HSPs)
scaffold0012 (98-225)||(211631-211758)
scaffold0012 (87-225)||(238363-238502)
[»] scaffold0007 (3 HSPs)
scaffold0007 (87-218)||(67865-67996)
scaffold0007 (87-217)||(32519-32649)
scaffold0007 (87-217)||(37268-37398)
[»] scaffold0349 (1 HSPs)
scaffold0349 (153-227)||(2098-2172)
[»] scaffold0003 (1 HSPs)
scaffold0003 (165-225)||(61117-61177)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 66)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 28141297 - 28141044
Alignment:
Q  17 cataggcattggcagcagatggaacagggacaaaataaaggttaaagactaaaaaacatctataccagtcttactcaccaaattttcttctaaaacttgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141297 cataggcattggcagcagatggaacagggacaaaataaaggttaaagactaaaaaacatctataccagtcttactcaccaaattttcttctaaaacttgg 28141198  T
Q  117 actatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141197 actatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 28141098  T
Q  217 atgtcacataagtacaaccacattgtctataaatctttattagacatttctcga 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141097 atgtcacataagtacaaccacattgtctataaatctttattagacatttctcga 28141044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 263 - 361
Target Start/End: Original strand, 28140938 - 28141036
Alignment:
Q  263 tttctcgacattgcttgttgtttcagaggatatatattagcagaggttgaagatattctctatgctcattacggtgaatgcatgaaatatcatattaga 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28140938 tttctcgacattgcttgttgtttcagaggatatatattagcagaggttgaagatattctctatgctcattacggtgaatgcatgaaatatcatattaga 28141036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 29827680 - 29827541
Alignment:
Q  85 tcttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaat 184  Q
    ||||||||||| ||||||||||||| ||||| ||||| |||| || |||||| || ||||| || || ||||||||||| |||||||||||||| |||||    
T  29827680 tcttactcaccgaattttcttctaagacttgaactatatcttcatagaaccacaacctactacgctttccaggctctttcggtgattcttgtcgtacaat 29827581  T
Q  185 ttctttacccatctcctctatcaagtcatgtaatgtcaca 224  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  29827580 ttctttacccatgtcttctatcaagtcatgtaatgtcaca 29827541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 2186508 - 2186369
Alignment:
Q  85 tcttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaat 184  Q
    ||||||||||| ||||| | | ||||||  | ||||| |||| |||| |||| || ||||| ||||| |||||||||||||||||||||||||| || ||    
T  2186508 tcttactcaccgaatttgcatgtaaaacaggaactatatcttcatgggaccacaacctactacgttttccaggctcttttggtgattcttgtcgtacgat 2186409  T
Q  185 ttctttacccatctcctctatcaagtcatgtaatgtcaca 224  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  2186408 ttctttacccatttcctctatcaagtcatgtaatgtcaca 2186369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 97 - 224
Target Start/End: Original strand, 28096952 - 28097079
Alignment:
Q  97 aattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccat 196  Q
    ||||||||||||||||||| | ||| |||| ||||||| | || || || ||||| ||||| |||||||||||||||||||  |||||||||||||||||    
T  28096952 aattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccat 28097051  T
Q  197 ctcctctatcaagtcatgtaatgtcaca 224  Q
     || ||||||||||||||||||||||||    
T  28097052 gtcttctatcaagtcatgtaatgtcaca 28097079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 28150854 - 28150724
Alignment:
Q  97 aattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccat 196  Q
    ||||| ||||||||||||| | ||| |||| || |||||| || ||  | || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  28150854 aatttccttctaaaacttgaaatatatcttcatagaaccacaacctgttgcgcttcccaggctcttttggtgattcttgtcgtacaatttctttacccat 28150755  T
Q  197 ctcctctatcaagtcatgtaatgtcacataa 227  Q
     || |||||||||||||||||||| ||||||    
T  28150754 gtcttctatcaagtcatgtaatgttacataa 28150724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 29469895 - 29469759
Alignment:
Q  87 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 186  Q
    |||||||||  |||||||||||||||||| | ||| ||||||  | ||||||| ||||| ||||| ||||| ||||  ||||||||||||| ||||||||    
T  29469895 ttactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttccaggatcttcaggtgattcttgtctaacaattt 29469796  T
Q  187 ctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    |||| ||||| ||||||||||| ||||||||||||||    
T  29469795 ctttccccatatcctctatcaaatcatgtaatgtcac 29469759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 26624905 - 26624816
Alignment:
Q  133 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtca 222  Q
    ||||||||||||| ||||  ||||||||||| |||||||||||||| || ||| |||||||||| |||||||||||||||||||| ||||    
T  26624905 accataatctacttcgttctccaggctctttaggtgattcttgtcggacgattgctttacccatgtcctctatcaagtcatgtaaggtca 26624816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 26730882 - 26730793
Alignment:
Q  133 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtca 222  Q
    ||||||||||||| ||||  ||||||||||| |||||||||||||| || ||| |||||||||| |||||||||||||||||||| ||||    
T  26730882 accataatctacttcgttctccaggctctttaggtgattcttgtcggacgattgctttacccatgtcctctatcaagtcatgtaaggtca 26730793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 29758956 - 29759083
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||||||||||||||| | ||| || |||   |||||||||||| | ||||| ||||| ||||  || |||||||||| ||||||||||||||||||     
T  29758956 attttcttctaaaacttgcattatatcattagaaaaccataatctagtgcgttttccaggatcttgaggcgattcttgtctaacaatttctttacccata 29759055  T
Q  198 tcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||| ||| ||||| ||||||||||    
T  29759056 tcctctaccaaatcatgcaatgtcacat 29759083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 28296241 - 28296367
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||||||||| || || | |||||||||||||||||| || ||||| ||| | || ||||||||||| |||| ||   | |||||||||||||||||     
T  28296241 attttcttctaagacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcacaatttctttacccatt 28296340  T
Q  198 tcctctatcaagtcatgtaatgtcaca 224  Q
    | |||||||||| ||||||||||||||    
T  28296341 ttctctatcaaggcatgtaatgtcaca 28296367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 28515832 - 28515706
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||||||||| || || | |||||||||||||||||| || ||||| ||| | || ||||||||||| |||| ||   | |||||||||||||||||     
T  28515832 attttcttctaagacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcacaatttctttacccatt 28515733  T
Q  198 tcctctatcaagtcatgtaatgtcaca 224  Q
    | |||||||||| ||||||||||||||    
T  28515732 ttctctatcaaggcatgtaatgtcaca 28515706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 26863248 - 26863123
Alignment:
Q  99 ttttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatct 198  Q
    |||||||||||||| |||| ||| || | |||  ||||||| ||||| ||||  || |||||||| || ||||||||||| || |||||||| ||||| |    
T  26863248 ttttcttctaaaacgtggattatatcatcatgacaccataacctacttcgttcacccggctctttaggagattcttgtcggacgatttctttgcccatgt 26863149  T
Q  199 cctctatcaagtcatgtaatgtcaca 224  Q
    |||||||||||||||||||| |||||    
T  26863148 cctctatcaagtcatgtaatctcaca 26863123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 28187060 - 28186955
Alignment:
Q  119 tatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 218  Q
    |||||||||||||||||| || ||||| ||| | |||||||||||||| || ||||  || ||||||||||||||||| | |||||||||| |||||||     
T  28187060 tatgtctttatggaaccacaacctactacgtcttccaggctcttttggagactctttccggacaatttctttacccattttctctatcaaggcatgtaac 28186961  T
Q  219 gtcaca 224  Q
    ||||||    
T  28186960 gtcaca 28186955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 26885725 - 26885633
Alignment:
Q  133 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||| ||||| ||||  |||||||||||   ||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  26885725 accataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctctaccaagtcatgtaatgtcacat 26885633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 26960760 - 26960677
Alignment:
Q  141 ctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcaca 224  Q
    ||||| ||||| |||||||||||   |||||| ||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  26960760 ctactgcgttttccaggctctttaattgattcctgtcgaacaatttccatacccatatcctctatcaagtcatgtaatgtcaca 26960677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 27529845 - 27529940
Alignment:
Q  132 aaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacataa 227  Q
    ||||| || ||||| ||||  |||||||| |  |||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||    
T  27529845 aaccacaacctactgcgttctccaggctcatcgggtgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaatgtcacataa 27529940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 27680604 - 27680513
Alignment:
Q  134 ccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    |||||| ||||| ||||  ||||||||||| |||||||||||||| || | |||||||||||| |||| |||||||||||||||| ||||||    
T  27680604 ccataacctacttcgttctccaggctctttaggtgattcttgtcggacgacttctttacccatgtcctttatcaagtcatgtaatctcacat 27680513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 27697148 - 27697219
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcaca 224  Q
    ||||||||||| | |||||||||||| || | |||||||||||| |||||||||||||||||||||||||||    
T  27697148 ccaggctctttagttgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaatgtcaca 27697219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 29673519 - 29673646
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||||||||||||||| | ||| ||||     |||||||| ||||| ||||| ||||| ||||  |||| |||||||| |||||||||||| |||||     
T  29673519 attttcttctaaaacttgaattatatcttcggaaaaccataacctactacgttttccaggatcttcaggtgcttcttgtctaacaatttcttttcccata 29673618  T
Q  198 tcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||| ||| ||||||||||||||||    
T  29673619 tcctctaccaaatcatgtaatgtcacat 29673646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 26850347 - 26850277
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    |||||||||||   |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||    
T  26850347 ccaggctctttaattgattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaatgtcac 26850277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 25484664 - 25484603
Alignment:
Q  168 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacataagt 229  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||    
T  25484664 gattcttgtcgaacgacttctttacccatgtcctctatcaagtcatgtaaggtcacataagt 25484603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 26144473 - 26144412
Alignment:
Q  168 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacataagt 229  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||    
T  26144473 gattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaaggtcacataagt 26144412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 28902288 - 28902153
Alignment:
Q  87 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 186  Q
    |||||||||  |||||||||||||||||   |||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  28902288 ttactcaccgtattttcttctaaaacttcagctatgtctttagcagaccataatctactgcgttctccaggctgatctggtgattctagtctgacaattt 28902189  T
Q  187 ctttacccatctcctctatcaagtcatgtaatgtca 222  Q
    |||| ||||| || |||||||  |||||||||||||    
T  28902188 cttttcccatatcttctatcagatcatgtaatgtca 28902153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 29842548 - 29842619
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcaca 224  Q
    ||||||||||| | ||||||| |||| ||||||||||||||||| || |||||||||||||||| |||||||    
T  29842548 ccaggctctttcgttgattctggtcgtacaatttctttacccatgtcttctatcaagtcatgtagtgtcaca 29842619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 27591574 - 27591644
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    ||||||||||| |||||||||||||| || | ||||||||||||  |||||||||| ||||||||||||||    
T  27591574 ccaggctctttaggtgattcttgtcggacgacttctttacccatgacctctatcaattcatgtaatgtcac 27591644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 27676173 - 27676243
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    ||||||||||| |||||||||||||| || | ||||||||||||  |||||||||| ||||||||||||||    
T  27676173 ccaggctctttaggtgattcttgtcggaccacttctttacccatgacctctatcaattcatgtaatgtcac 27676243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 27704822 - 27704896
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacataa 227  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||| ||||||||||||||||    
T  27704822 ccaggctctttaattgattcttgtcggacgacttctttacccatatcctctatcaagttatgtaatgtcacataa 27704896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 31286176 - 31286114
Alignment:
Q  156 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 218  Q
    |||||||| |||||||||||||| || | |||||||||||| |||||||||||||||||||||    
T  31286176 ggctctttaggtgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaat 31286114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 25512496 - 25512435
Alignment:
Q  168 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacataagt 229  Q
    ||||||||||| ||  ||||||||||||| |||||||||||||||||||| |||||||||||    
T  25512496 gattcttgtcggacggtttctttacccatgtcctctatcaagtcatgtaaggtcacataagt 25512435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 26637250 - 26637193
Alignment:
Q  166 gtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    ||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||    
T  26637250 gtgattcttgtcggacgatttctatacccatatcctctatcaagtcatgtaatgtcac 26637193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 26743216 - 26743159
Alignment:
Q  166 gtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    ||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||    
T  26743216 gtgattcttgtcggacgatttctatacccatatcctctatcaagtcatgtaatgtcac 26743159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 26938701 - 26938581
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||||| ||| || || ||||| ||||| |  ||||| |||||| | ||||  |||| ||||||   ||||||||||| ||||||||||||||||||     
T  26938701 attttcttttaatacatgaactatatctttgtcaaaccacaatctagtgcgttctccagcctctttgactgattcttgtctaacaatttctttacccatg 26938602  T
Q  198 tcctctatcaagtcatgtaat 218  Q
    ||||| |||||||||||||||    
T  26938601 tcctcaatcaagtcatgtaat 26938581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 27216138 - 27215998
Alignment:
Q  87 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 186  Q
    |||||||| | |||||||| || |||||| ||||| || |  || ||||| || ||||| |||| |||||| |  |  |||||||||||||| |||| ||    
T  27216138 ttactcacgatattttcttttagaacttgaactatatcatcgtgaaaccacaacctactgcgttccccaggattgtcgggtgattcttgtcggacaactt 27216039  T
Q  187 ctttacccatctcctctatcaagtcatgtaatgtcacataa 227  Q
    || ||||||| ||||||||||||||||||||| ||| ||||    
T  27216038 ctctacccatatcctctatcaagtcatgtaatctcatataa 27215998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 28327157 - 28327037
Alignment:
Q  100 tttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctc 199  Q
    |||||||||| || || | ||| |||||||| ||||| || ||||| | ||| ||||| |||||| | |||||||||||||||||||||||||| || |     
T  28327157 tttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctatttg 28327058  T
Q  200 ctctatcaagtcatgtaatgt 220  Q
    ||| || ||| ||||||||||    
T  28327057 ctccattaaggcatgtaatgt 28327037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 28504793 - 28504673
Alignment:
Q  100 tttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctc 199  Q
    |||||||||| || || | ||| |||||||| ||||| || ||||| | ||| ||||| |||||| | |||||||||||||||||||||||||| || |     
T  28504793 tttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctatttg 28504694  T
Q  200 ctctatcaagtcatgtaatgt 220  Q
    ||| || ||| ||||||||||    
T  28504693 ctccattaaggcatgtaatgt 28504673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 28787876 - 28787804
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||||||| || ||||||||||| || | |||||||||||| || |||||||||||||||||| ||||||    
T  28787876 ccaggctctttaggcgattcttgtcggacgacttctttacccatgtcttctatcaagtcatgtaatctcacat 28787804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 28793997 - 28793925
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||||||| || ||||||||||| || | |||||||||||| || |||||||||||||||||| ||||||    
T  28793997 ccaggctctttaggcgattcttgtcggacgacttctttacccatgtcttctatcaagtcatgtaatctcacat 28793925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 26804149 - 26804018
Alignment:
Q  85 tcttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaat 184  Q
    |||||||||| |  ||||||| || ||| || ||||| |||| |||   |||||| ||||| |||||  |||| ||||| |||||||||||||| || |     
T  26804149 tcttactcacaatgttttcttttataacatgaactatatcttcatgacgccataacctacttcgtttttcaggatctttaggtgattcttgtcggacgac 26804050  T
Q  185 ttctttacccatctcctctatcaagtcatgta 216  Q
    |||||||||||| |||| ||||||||||||||    
T  26804049 ttctttacccatgtcctttatcaagtcatgta 26804018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 29694932 - 29695023
Alignment:
Q  134 ccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    |||||| ||| | ||||| ||||| ||||  ||||||||| ||| |||||||||||| ||||| ||||||||||| ||||||||||| ||||    
T  29694932 ccataacctagtgcgttttccaggatcttcaggtgattctcgtctaacaatttctttccccatatcctctatcaaatcatgtaatgttacat 29695023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 25075502 - 25075432
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    |||||||||||   |||||| ||||| || |||||||||||||| ||||||| ||||||||||||||||||    
T  25075502 ccaggctctttaattgattcatgtcggacgatttctttacccatgtcctctaacaagtcatgtaatgtcac 25075432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 25581327 - 25581273
Alignment:
Q  168 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtca 222  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||| ||||    
T  25581327 gattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaaggtca 25581273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 26657643 - 26657525
Alignment:
Q  107 taaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatc 206  Q
    |||||| || |||||||| || ||  ||||||| ||||| ||||  || ||||||||   |||||||||||| || |||||||||||||| |||||||||    
T  26657643 taaaacatgaactatgtcattgtgacaccataacctactacgttctccgggctctttacttgattcttgtcggacgatttctttacccatgtcctctatc 26657544  T
Q  207 aagtcatgtaatgtcacat 225  Q
    || || ||||||| |||||    
T  26657543 aaatcgtgtaatgccacat 26657525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 26763614 - 26763496
Alignment:
Q  107 taaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatc 206  Q
    |||||| || |||||||| || ||  ||||||| ||||| ||||  || ||||||||   |||||||||||| || |||||||||||||| |||||||||    
T  26763614 taaaacatgaactatgtcattgtgacaccataacctactacgttctccgggctctttacttgattcttgtcggacgatttctttacccatgtcctctatc 26763515  T
Q  207 aagtcatgtaatgtcacat 225  Q
    || || ||||||| |||||    
T  26763514 aaatcgtgtaatgccacat 26763496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 26813160 - 26813102
Alignment:
Q  165 ggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    |||||||||||| | ||||||||||||||| | | ||||||||||||||||||||||||    
T  26813160 ggtgattcttgttggacaatttctttacccgtgtgctctatcaagtcatgtaatgtcac 26813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 27603254 - 27603324
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    ||||||||||| |||||||||||||| || | |||||||||||| ||||||||||||| ||| | ||||||    
T  27603254 ccaggctctttaggtgattcttgtcggacgacttctttacccatgtcctctatcaagttatgcagtgtcac 27603324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 27609679 - 27609753
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacataa 227  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||||||||||  ||||||||    
T  27609679 ccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaacatcacataa 27609753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 27717058 - 27717132
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacataa 227  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||||||||||  ||||||||    
T  27717058 ccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaacatcacataa 27717132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 29476608 - 29476686
Alignment:
Q  131 gaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaag 209  Q
    ||||||||||||||| ||| ||||||| |||| ||||||||| |  ||||||||||||||||||||   ||||||||||    
T  29476608 gaaccataatctactacgtctcccaggatcttctggtgattcctcacgaacaatttctttacccatgctctctatcaag 29476686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 25546588 - 25546531
Alignment:
Q  168 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||||||| || | |||||||||||| |||||||||||||||||||| |||||||    
T  25546588 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaaggtcacat 25546531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 26057527 - 26057470
Alignment:
Q  168 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||||||| || | |||||||||||| |||||||||||||||||||| |||||||    
T  26057527 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaaggtcacat 26057470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 26077497 - 26077440
Alignment:
Q  168 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||||||| || | |||||||||||| |||||||||||||||||||| |||||||    
T  26077497 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaaggtcacat 26077440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 26951352 - 26951295
Alignment:
Q  167 tgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcaca 224  Q
    |||||||||||| |  |||||| ||||||| |||||||||||||||||||||||||||    
T  26951352 tgattcttgtcggatgatttctatacccatatcctctatcaagtcatgtaatgtcaca 26951295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 26825445 - 26825374
Alignment:
Q  156 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacataa 227  Q
    |||||||| | ||||| |||||| || | |||||| ||||| |||| |||||||||||||||||||||||||    
T  26825445 ggctctttagatgattgttgtcggactacttctttgcccatgtcctttatcaagtcatgtaatgtcacataa 26825374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 27663762 - 27663829
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 220  Q
    |||||||||||   |||||||||||| || |||||| ||||||| | |||||||||||||||||||||    
T  27663762 ccaggctctttaattgattcttgtcggactatttctatacccatatactctatcaagtcatgtaatgt 27663829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 354
Target Start/End: Complemental strand, 28097222 - 28097131
Alignment:
Q  263 tttctcgacattgcttgttgtttcagaggatatatattagcagaggttgaagatattctctatgctcattacggtgaatgcatgaaatatca 354  Q
    |||||||||||||||||||| |||| ||| |||| |||   |||||| |||||||| || | ||||||||||||| || |||||| ||||||    
T  28097222 tttctcgacattgcttgttgcttcaaagggtataaattgaaagaggtggaagatatgctttgtgctcattacggtcaacgcatgagatatca 28097131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 25491879 - 25491933
Alignment:
Q  166 gtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 220  Q
    |||||||||||||||| | |||||||||||| | ||||||||||| |||||||||    
T  25491879 gtgattcttgtcgaacgacttctttacccatgtgctctatcaagttatgtaatgt 25491933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 26648093 - 26648019
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacataa 227  Q
    |||||||||||  ||||||||||||| || | ||| |||||||| |||| |||||||||||||||| ||| ||||    
T  26648093 ccaggctctttacgtgattcttgtcggactacttccttacccatgtcctttatcaagtcatgtaatctcagataa 26648019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 26754061 - 26753987
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacataa 227  Q
    |||||||||||  ||||||||||||| || | ||| |||||||| |||| |||||||||||||||| ||| ||||    
T  26754061 ccaggctctttacgtgattcttgtcggactacttccttacccatgtcctttatcaagtcatgtaatctcagataa 26753987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 29523536 - 29523458
Alignment:
Q  132 aaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagt 210  Q
    ||||||| |||||| | ||||||||||||| ||||||||||| | ||||||| ||||||| |||| | ||| |||||||    
T  29523536 aaccatagtctactacatttcccaggctctgttggtgattctcgacgaacaagttctttagccattttctcgatcaagt 29523458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 26978989 - 26978936
Alignment:
Q  167 tgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 220  Q
    |||||||||||| || |||||| ||||||| ||||||||||||| |||||||||    
T  26978989 tgattcttgtcggacgatttctatacccatatcctctatcaagtaatgtaatgt 26978936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 28490040 - 28490121
Alignment:
Q  141 ctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtca 222  Q
    ||||| ||||| ||||| | || |||||| ||||||| |||||||||||| ||||| ||||||| ||| || ||||||||||    
T  28490040 ctactgcgttttccaggattttctggtgactcttgtctaacaatttctttccccatatcctctaccaaatcgtgtaatgtca 28490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 29802450 - 29802531
Alignment:
Q  141 ctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtca 222  Q
    ||||| ||||| ||||| | || |||||| ||||||| |||||||||||| ||||| ||||||| ||| || ||||||||||    
T  29802450 ctactgcgttttccaggattttctggtgactcttgtctaacaatttctttccccatatcctctaccaaatcgtgtaatgtca 29802531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 358
Target Start/End: Complemental strand, 29842771 - 29842676
Alignment:
Q  263 tttctcgacattgcttgttgtttcagaggatatatattagcagaggttgaagatattctctatgctcattacggtgaatgcatgaaatatcatatt 358  Q
    |||||||||||||||||||| |||| ||| |||   || | |||||||||||||||||| | |||| || | ||| |||||||  |||||||||||    
T  29842771 tttctcgacattgcttgttgcttcaaagggtatgatttgggagaggttgaagatattctttgtgcttatcatggtcaatgcatagaatatcatatt 29842676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 29727451 - 29727581
Alignment:
Q  89 actcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttct 188  Q
    |||||||  |||||||||||||||||    ||| |||||| ||  |||||| ||||| ||||  || || |  |||||||| ||||||| ||||||||||    
T  29727451 actcaccttattttcttctaaaactttttgtatatctttagggtcccataacctactgcgttctcccggattatttggtgactcttgtctaacaatttct 29727550  T
Q  189 ttacccatctcctctatcaagtcatgtaatg 219  Q
    || ||||| || |||| ||| ||||||||||    
T  29727551 tttcccatatcttctagcaaatcatgtaatg 29727581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 27426186 - 27426246
Alignment:
Q  165 ggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||||| |||| || | |||||||||||| | ||||||||||| |||||||| |||||    
T  27426186 ggtgattctagtcggacgagttctttacccatgttctctatcaagttatgtaatgacacat 27426246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 26137560 - 26137434
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||||| |||||| || ||||| |||| ||| ||||| || ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||     
T  26137560 attttcttttaaaacatgaactatatcttcatgaaaccacaacctactgcgttttccaggttctttgggtgattcttgtcggacaatttctttacccata 26137461  T
Q  198 tcctctatcaagtcatgtaatgtcaca 224  Q
    |||||||||||||||||||||| ||||    
T  26137460 tcctctatcaagtcatgtaatgccaca 26137434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 98 - 220
Target Start/End: Original strand, 5921979 - 5922101
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||||||||||||||| ||||| |||| | || ||||||| ||||| || || ||||||||||| ||||||||||||| |||||||||||| |||||     
T  5921979 attttcttctaaaacttgaactatatcttcagggcaccataacctactgcgctttccaggctctttcggtgattcttgtctaacaatttcttttcccatg 5922078  T
Q  198 tcctctatcaagtcatgtaatgt 220  Q
    ||||||||||  |||||||||||    
T  5922079 tcctctatcacatcatgtaatgt 5922101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 266888 - 266980
Alignment:
Q  133 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||| ||||| ||||  ||||||||||| ||||||||||| || || | |||||||||||| |||||||||| |||||||||||||||||    
T  266888 accataacctacttcgttctccaggctctttaggtgattcttggcggaccacttctttacccatgtcctctatcatgtcatgtaatgtcacat 266980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 28126243 - 28126316
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacata 226  Q
    |||||||||||  |||||||||  || || |||||||||||| | |||||||||||||||||||||||||||||    
T  28126243 ccaggctctttacgtgattctttccggacgatttctttacccgtatcctctatcaagtcatgtaatgtcacata 28126316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 16692550 - 16692410
Alignment:
Q  87 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 186  Q
    |||||||||| |||||||||||||||||| ||||| ||||  || ||||| || ||||| ||||| ||||| | |||||| ||||||| ||| |||||||    
T  16692550 ttactcaccatattttcttctaaaacttgaactatatcttcgtgaaaccacaacctactgcgtttaccaggatgttttggggattcttttcggacaattt 16692451  T
Q  187 ctttacccatctcctctatcaagtcatgtaatgtcacataa 227  Q
    |||||||||| ||||| ||||||| ||| ||||||||||||    
T  16692450 ctttacccatgtcctcaatcaagtgatgcaatgtcacataa 16692410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 226
Target Start/End: Original strand, 17991704 - 17991832
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||| | |||||| || |||||||| ||||   |||| |||||||||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||     
T  17991704 attttcctgtaaaacatgaactatgtcattataacaccacaatctactccgttctccaggctctttaggtgattcttgccgaacgatttctttacccatg 17991803  T
Q  198 tcctctatcaagtcatgtaatgtcacata 226  Q
    ||||||||||||||||||| ||| |||||    
T  17991804 tcctctatcaagtcatgtactgtaacata 17991832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 3281309 - 3281218
Alignment:
Q  123 tctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatg 214  Q
    |||| ||||||||| || || || ||||| ||||||||| ||  |||||| ||||  ||||||||||||||||| || ||||||||||||||    
T  3281309 tcttcatggaaccacaacctgctacgttttccaggctctcttactgattcctgtcttacaatttctttacccatgtcttctatcaagtcatg 3281218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 56795 - 56921
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||||||||| || |  | ||| ||||||||||||||||| ||||| ||| | |||||||||||||| || ||||  || |||||||||||||||||     
T  56795 attttcttctaagacataaattatatctttatggaaccataacctactacgtcttccaggctcttttggagactctttgcggacaatttctttacccatt 56894  T
Q  198 tcctctatcaagtcatgtaatgtcaca 224  Q
    | |||||||||| ||||||| ||||||    
T  56895 ttctctatcaaggcatgtaacgtcaca 56921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 12590413 - 12590286
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||||||||||||||| | ||  ||||||  | ||||||| ||||| ||||| ||||| | ||  ||||||||||||| ||| |||||||| |||||     
T  12590413 attttcttctaaaacttgaattaaatctttagaggaccataacctactacgttttccaggattttccggtgattcttgtctaactatttctttccccata 12590314  T
Q  198 tcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||| ||| ||||||||||||||||    
T  12590313 tcctctaccaaatcatgtaatgtcacat 12590286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 16371627 - 16371764
Alignment:
Q  87 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 186  Q
    ||||| ||| |||| |||||||||||||| ||||  || ||    |||||||| ||||| ||||  || ||||| ||||||||||||||||| |||||||    
T  16371627 ttacttaccgaattgtcttctaaaacttgaactacatcattgacaaaccataacctactacgttcgcctggctcctttggtgattcttgtcggacaattt 16371726  T
Q  187 ctttacccatctcctctatcaagtcatgtaatgtcaca 224  Q
    |||||||||| || |||| || || |||||||||||||    
T  16371727 ctttacccatgtcttctaccaggttatgtaatgtcaca 16371764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 16441689 - 16441599
Alignment:
Q  134 ccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcaca 224  Q
    |||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||| | ||||| ||   |||||||| |||||||||||||    
T  16441689 ccataacctactacgtttgccaggctcatttggtgattcctgtcgaacaatttctctgcccatgtctcgtatcaagttatgtaatgtcaca 16441599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 35984973 - 35984859
Alignment:
Q  102 tcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcct 201  Q
    |||||||||||||| | ||| |||| |||  ||||||| | ||| || || ||||| |||| |||||||||  ||||||||||||| |||||||| ||||    
T  35984973 tcttctaaaacttgaattatatcttcatgagaccataaccgactacgctttccaggttcttctggtgattccagtcgaacaatttccttacccatgtcct 35984874  T
Q  202 ctatcaagtcatgta 216  Q
    |||||||| ||||||    
T  35984873 ctatcaaggcatgta 35984859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 31906742 - 31906614
Alignment:
Q  88 tactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttc 187  Q
    |||||||  |||| |||||||||||||| | ||| ||||  || |||||||||| ||| ||||| ||||| || | |||||||||   || |||||||||    
T  31906742 tactcactgaattgtcttctaaaacttgaattatatcttcgtgaaaccataatcgactacgttttccaggttcgtctggtgattccaatctaacaatttc 31906643  T
Q  188 tttacccatctcctctatcaagtcatgta 216  Q
    |||| |||| ||| | |||||||||||||    
T  31906642 tttagccatgtccccaatcaagtcatgta 31906614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 16450567 - 16450445
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||| | ||||||||||||||  |||| |   |||||||| ||||| ||||| |||||||| | |||||||||  |||| ||||||||| | |||||     
T  16450567 attttcatttaaaacttggactacatcttcacaaaaccataacctactacgtttgccaggctcatgtggtgattcaagtcggacaatttctctgcccatt 16450468  T
Q  198 tcctctatcaagtcatgtaatgt 220  Q
    |  | ||||| ||||||||||||    
T  16450467 ttttgtatcaggtcatgtaatgt 16450445  T

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Target: scaffold0573 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 7506 - 7641
Alignment:
Q  87 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 186  Q
    |||||||||  |||||||||||||||||   |||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  7506 ttactcaccgtattttcttctaaaacttcagctatgtctttagcagaccataatctactgcgttctccaggctgatctggtgattctagtctgacaattt 7605  T
Q  187 ctttacccatctcctctatcaagtcatgtaatgtca 222  Q
    |||| ||||| || |||||||  |||||||||||||    
T  7606 cttttcccatatcttctatcagatcatgtaatgtca 7641  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 615468 - 615341
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||||| ||||||||| | ||| ||||||    ||||||| | ||| || ||||| || ||||  ||||||||||||| |||||||||||| |||||     
T  615468 attttcttgtaaaacttgaattatatctttagaagaccataaccgacttcgcttcccgggatcttcgggtgattcttgtctaacaatttctttccccata 615369  T
Q  198 tcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||| ||| ||||||||||||||||    
T  615368 tcctctaccaaatcatgtaatgtcacat 615341  T

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Target: scaffold1870 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 401 - 332
Alignment:
Q  156 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    |||||||| || ||||||||||| || | |||||||||||| |||||||| |||||||||||||||||||    
T  401 ggctctttaggcgattcttgtcgtacgacttctttacccatgtcctctataaagtcatgtaatgtcacat 332  T

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Target: scaffold0419 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 9119 - 9050
Alignment:
Q  156 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    |||||||| || ||||||||||| || | |||||||||||| |||||||| |||||||||||||||||||    
T  9119 ggctctttaggcgattcttgtcgtacgacttctttacccatgtcctctataaagtcatgtaatgtcacat 9050  T

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Target: scaffold0277 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 3242 - 3331
Alignment:
Q  133 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtca 222  Q
    ||||||||||||| | ||  ||||||||||| || ||||||||||| || | |||||||||||| |||| |||||||||||||| |||||    
T  3242 accataatctacttctttctccaggctctttgggcgattcttgtcggacgacttctttacccatgtcctttatcaagtcatgtagtgtca 3331  T

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Target: scaffold0277; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 12205 - 12294
Alignment:
Q  133 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtca 222  Q
    ||||||||||||| | ||  ||||||||||| || ||||||||||| || | |||||||||||| |||| |||||||||||||| |||||    
T  12205 accataatctacttctttctccaggctctttgggcgattcttgtcggacgacttctttacccatgtcctttatcaagtcatgtagtgtca 12294  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 18688179 - 18688248
Alignment:
Q  154 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    |||||||||| ||||||||||  || |||||||||||||||||  |||||| ||||||||||||||||||    
T  18688179 caggctctttaggtgattctttccggacaatttctttacccatgacctctagcaagtcatgtaatgtcac 18688248  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 18730060 - 18730131
Alignment:
Q  154 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    |||||||||| ||||||||||  || || ||||||||||||||  |||||| ||||||||||||||||||||    
T  18730060 caggctctttgggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgtcacat 18730131  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 18678122 - 18678191
Alignment:
Q  154 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    |||||||||| ||||||||||  || || ||||||||||||||  |||||| ||||||||||||||||||    
T  18678122 caggctctttgggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgtcac 18678191  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 18697965 - 18698034
Alignment:
Q  154 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    |||||||||| ||||||||||  || || ||||||||||||||  |||||| ||||||||||||||||||    
T  18697965 caggctctttgggtgattctttccggacgatttctttacccatggcctctagcaagtcatgtaatgtcac 18698034  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 18722635 - 18722704
Alignment:
Q  154 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    |||||||||| ||||||||||  ||||  ||||||||||||||  |||||| ||||||||||||||||||    
T  18722635 caggctctttaggtgattctttacgaatgatttctttacccatgacctctagcaagtcatgtaatgtcac 18722704  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 5089726 - 5089635
Alignment:
Q  266 ctcgacattgcttgttgtttcagaggatatatattagcagaggttgaagatattctctatgctcattacggtgaatgcatgaaatatcatat 357  Q
    |||||||||||||||||||||| ||||||||  || |  ||||| ||| |||| || | ||||||||| ||| | |||||||||||||||||    
T  5089726 ctcgacattgcttgttgtttcaaaggatatagcttggatgaggtcgaatatatactttgtgctcattatggttattgcatgaaatatcatat 5089635  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 18654042 - 18654111
Alignment:
Q  154 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcac 223  Q
    |||||| ||| ||||||||||  || || ||||||||||||||  |||||| ||||||||||||||||||    
T  18654042 caggctgtttaggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgtcac 18654111  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 5089533 - 5089589
Alignment:
Q  168 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcaca 224  Q
    ||||||| |||||||||||||||||||||    ||||||| ||||||||||||||||    
T  5089533 gattcttttcgaacaatttctttacccatgatttctatcaggtcatgtaatgtcaca 5089589  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 18075369 - 18075309
Alignment:
Q  165 ggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||||| |||| || | |||||||||||| | ||||||||||| |||||||| |||||    
T  18075369 ggtgattctagtcggacgagttctttacccatgttctctatcaagttatgtaatgacacat 18075309  T

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Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 211631 - 211758
Alignment:
Q  98 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 197  Q
    |||||| |||||||| || | ||| |||| |  ||||||||||||||| ||||| ||||| | ||  ||||||||||||| |||||||||||| |||||     
T  211631 attttcctctaaaacgtgcattatatcttcagagaaccataatctactgcgttttccaggattttcaggtgattcttgtctaacaatttctttccccata 211730  T
Q  198 tcctctatcaagtcatgtaatgtcacat 225  Q
    || |||| ||| ||||| | ||||||||    
T  211731 tcttctaccaaatcatgcattgtcacat 211758  T

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Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 238363 - 238502
Alignment:
Q  87 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatt- 185  Q
    |||||||||  |||||||||||||||||| | ||| ||||||  | ||||||| ||||| ||||| ||| | | ||| ||||| ||| ||| |||||||     
T  238363 ttactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttccaagatttttaggtgaatctcgtctaacaattc 238462  T
Q  186 tctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
     |||| ||||| ||||||| ||| ||||||||| ||||||    
T  238463 actttccccatatcctctaccaaatcatgtaatctcacat 238502  T

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Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 67996 - 67865
Alignment:
Q  87 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 186  Q
    |||||||||  |||||| ||||||||||  ||||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  67996 ttactcaccgtattttcctctaaaacttcaactatgtctttagatgaccataatctactgcgttctccaggctgatatggtgattctagtctgacaattt 67897  T
Q  187 ctttacccatctcctctatcaagtcatgtaat 218  Q
    |||| ||||| || |||||||  |||||||||    
T  67896 cttttcccatgtcttctatcagatcatgtaat 67865  T

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Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 217
Target Start/End: Complemental strand, 32649 - 32519
Alignment:
Q  87 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 186  Q
    |||||||||  |||||| || |||||||  ||||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  32649 ttactcaccgtattttcctccaaaacttcaactatgtctttaacagaccataatctactgcgttctccaggctgatatggtgattctagtctgacaattt 32550  T
Q  187 ctttacccatctcctctatcaagtcatgtaa 217  Q
    |||| ||||| || |||||||  ||||||||    
T  32549 cttttcccatatcttctatcagatcatgtaa 32519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 217
Target Start/End: Complemental strand, 37398 - 37268
Alignment:
Q  87 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 186  Q
    |||||||||  |||||| || |||||||  ||||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  37398 ttactcaccgtattttcctccaaaacttcaactatgtctttaacagaccataatctactgcgttctccaggctgatatggtgattctagtctgacaattt 37299  T
Q  187 ctttacccatctcctctatcaagtcatgtaa 217  Q
    |||| ||||| || |||||||  ||||||||    
T  37298 cttttcccatatcttctatcagatcatgtaa 37268  T

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Target: scaffold0349 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 2098 - 2172
Alignment:
Q  153 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacataa 227  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||||||||||  ||||||||    
T  2098 ccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaacatcacataa 2172  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 61177 - 61117
Alignment:
Q  165 ggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 225  Q
    ||||||||| |||| || | |||||||||||| | ||||||||||| |||||||| |||||    
T  61177 ggtgattctagtcggacgagttctttacccatgttctctatcaagttatgtaatgacacat 61117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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