View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21423_high_9 (Length: 328)
Name: NF21423_high_9
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21423_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 21 - 318
Target Start/End: Complemental strand, 4309603 - 4309306
Alignment:
| Q |
21 |
aatccctggtctaatctcatcgaatcaattatcttctccattgtgatcatggctgctgcagctgttggtgaagcttttctatctttattaattgaagttg |
120 |
Q |
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| T |
4309603 |
aatccctggtctaatctcatcgaatcaattatcttctccatcgtgatcatggctgctgcagctgttggtgaagcttttctatctttattaattgaagttg |
4309504 |
T |
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| Q |
121 |
tccttgacaggctggcttctcctcaggttcttgacttcatccatgggaaaaaagtttacatcaatttggttcaaaggttgaataacactcttaatgctgt |
220 |
Q |
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| T |
4309503 |
tccttgacaggctggcttctcctcaggttcttgacttcatccatgggaaaaaagtttacatcaatttggttcaaaggttgaataacactctttatgctgt |
4309404 |
T |
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| Q |
221 |
ggaagctgtgctgaatgatgtggagcagaaacagttcaaagactctgctattaagaaatggctcgatgatctcaaagacgctgtctatgttgatgatg |
318 |
Q |
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| T |
4309403 |
ggaagctgtgctgaatgatgtggagcagaaacagttcaaagactctgctattaagaaatggctcgatgatctcaaagacgctgtctatgttgctgatg |
4309306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 66 - 318
Target Start/End: Complemental strand, 4315542 - 4315290
Alignment:
| Q |
66 |
atcatggctgctgcagctgttggtgaagcttttctatctttattaattgaagttgtccttgacaggctggcttctcctcaggttcttgacttcatccatg |
165 |
Q |
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| T |
4315542 |
atcatggcggcggcggttgttggtgaagcttttttgtctgctttcattgaagttgtccttgacaagctttcttctcctgaggttgttgacttgatccgtg |
4315443 |
T |
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| Q |
166 |
ggaaaaaagtttacatcaatttggttcaaaggttgaataacactcttaatgctgtggaagctgtgctgaatgatgtggagcagaaacagttcaaagactc |
265 |
Q |
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| T |
4315442 |
ggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtgcttaatgatactgaacagaaacagttcaaagactc |
4315343 |
T |
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| Q |
266 |
tgctattaagaaatggctcgatgatctcaaagacgctgtctatgttgatgatg |
318 |
Q |
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|||| |||| |||||||| |||||||||||||| ||||| ||| ||| ||||| |
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| T |
4315342 |
tgctgttaacaaatggcttgatgatctcaaagatgctgtttattttgctgatg |
4315290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 63 - 310
Target Start/End: Original strand, 4252955 - 4253202
Alignment:
| Q |
63 |
gtgatcatggctgctgcagctgttggtgaagcttttctatctttattaattgaagttgtccttgacaggctggcttctcctcaggttcttgacttcatcc |
162 |
Q |
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| T |
4252955 |
gtgatcatggcagtggcggctgtaggtgaagcatttctgtctgctttcattgaagttgtcctcgacaggctcgcttctcctgaggttgttgtcttgatcc |
4253054 |
T |
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| Q |
163 |
atgggaaaaaagtttacatcaatttggttcaaaggttgaataacactcttaatgctgtggaagctgtgctgaatgatgtggagcagaaacagttcaaaga |
262 |
Q |
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| T |
4253055 |
gtgggaagaaagttgacgtcaatttggtccaaaggttgaagaacactctttatgctgtggaagctgtgtttaacgatgcggagcaaaaacagttcaaaaa |
4253154 |
T |
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| Q |
263 |
ctctgctattaagaaatggctcgatgatctcaaagacgctgtctatgt |
310 |
Q |
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| T |
4253155 |
ccctgctattaacagatggatcgatgatctcaaaggtgttgtctatgt |
4253202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 111 - 304
Target Start/End: Complemental strand, 4306635 - 4306442
Alignment:
| Q |
111 |
attgaagttgtccttgacaggctggcttctcctcaggttcttgacttcatccatgggaaaaaagtttacatcaatttggttcaaaggttgaataacactc |
210 |
Q |
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|||||||||||||| |||||||| ||||||||| ||||| ||||||| |||| |||||| |||||| || |||| ||||||||||||||||| ||||||| |
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| T |
4306635 |
attgaagttgtcctcgacaggcttgcttctcctgaggttgttgacttgatccgtgggaagaaagttgacgtcaacttggttcaaaggttgaagaacactc |
4306536 |
T |
|
| Q |
211 |
ttaatgctgtggaagctgtgctgaatgatgtggagcagaaacagttcaaagactctgctattaagaaatggctcgatgatctcaaagacgctgt |
304 |
Q |
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| T |
4306535 |
tttatgctgttgaagctgtgttgaacgatgctgaacagaaacagctcaaagactctgctgttatcaaatggcttgatgatctcaaagatgctgt |
4306442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 64 - 318
Target Start/End: Original strand, 41932376 - 41932630
Alignment:
| Q |
64 |
tgatcatggctgctgcagctgttggtgaagcttttctatctttattaattgaagttgtccttgacaggctggcttctcctcaggttcttgacttcatcca |
163 |
Q |
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||||||||||||| | ||||||||||||||| ||||| || || ||||||||||||||||||||||| ||||||||| ||||| ||||||| || | |
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| T |
41932376 |
tgatcatggctgcagtagctgttggtgaagcatttctgtcagctttcattgaagttgtccttgacaggcttgcttctcctgaggttattgacttgatacg |
41932475 |
T |
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| Q |
164 |
tgggaaaaaagtttacatcaatttggttcaaaggttgaataacactcttaatgctgtggaagctgtgctgaatgatgtggagcagaaacagttcaaagac |
263 |
Q |
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|||||| |||||| || |||||||| | ||||||||||| ||||||||| ||||||| |||||||| ||||||||| || |||||||||||||||||| |
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| T |
41932476 |
tgggaagaaagttgacgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtcttgaatgatgctgaacagaaacagttcaaagac |
41932575 |
T |
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| Q |
264 |
tctgctattaagaaatggctcgatgatctcaaagacgctgtctatgttgatgatg |
318 |
Q |
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|||||| |||| ||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
41932576 |
tctgctgttaacaaatggctcgatgatctcaaagatgctgtctatgttgctgatg |
41932630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 310
Target Start/End: Complemental strand, 34803488 - 34803314
Alignment:
| Q |
136 |
cttctcctcaggttcttgacttcatccatgggaaaaaagtttacatcaatttggttcaaaggttgaataacactcttaatgctgtggaagctgtgctgaa |
235 |
Q |
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||||||||||| ||||||| || |||| |||||| | ||| | |||||||||| ||| ||||||| || |||| |||| || |||||||| || | |
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| T |
34803488 |
cttctcctcagattcttgaattgatccgtgggaagcaggttgatgtcaatttggtacaacggttgaagaatactccatatgcagtagaagctgttcttta |
34803389 |
T |
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| Q |
236 |
tgatgtggagcagaaacagttcaaagactctgctattaagaaatggctcgatgatctcaaagacgctgtctatgt |
310 |
Q |
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||||| ||| |||||||| |||||||||||||| |||| || ||||||||||| |||||||||||||| ||||| |
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| T |
34803388 |
tgatgcggaatagaaacagatcaaagactctgctgttaacaactggctcgatgacctcaaagacgctgtttatgt |
34803314 |
T |
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