View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21423_low_10 (Length: 316)
Name: NF21423_low_10
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21423_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 43107344 - 43107058
Alignment:
| Q |
20 |
aggggttttccaaaattcacttgatgatgaaggaaagaagaaattcatctacctaggagatggaaataatgacttttgtcctagtttaaacctcaaagag |
119 |
Q |
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| T |
43107344 |
aggggttttccaaaattcacttgatgatgaaggaaagaagaaattcatctacctagaagatggaaataatgacttttgtcctagtttaaacctcaaagag |
43107245 |
T |
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| Q |
120 |
agtgattgattatctcatgcctagatgaactttcaattgtttgattttgtctctaaaaattctaaagacataaaggcacatctacatggttggagagatg |
219 |
Q |
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| T |
43107244 |
agtgattgattatctcatgcctagatgaactttcaattgtttgattttgtctctaaaaattctaaagacataaaggcacatgtacatggttggagagatg |
43107145 |
T |
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| Q |
220 |
gagaagagtttgagaaagttatgcttcatatcatnnnnnnncctaatattggtaaagggaacattgttgatccaaaaattatctctg |
306 |
Q |
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| T |
43107144 |
gggaagagtttgagaatgttatgcttcatatcatcaaaaaacctaatattggtaaagggaacactgttgatccaaaaattatctctg |
43107058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 30 - 304
Target Start/End: Complemental strand, 43104108 - 43103837
Alignment:
| Q |
30 |
caaaattcacttgatgatgaaggaaagaagaaattcatctacctaggagatggaaataatgacttttgtcctagtttaaacctcaaagagagtgattgat |
129 |
Q |
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| T |
43104108 |
caaaattcacttgatgatgaaggaaagaagaaaatcatctacttaggagatggaagtggagacttttgccctagtctaaagctcaaagagagtgatt--- |
43104012 |
T |
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| Q |
130 |
tatctcatgcctaga-tgaactttcaattgtttgattttgtctctaaaaattctaaagacataaaggcacatctacatggttggagagatggagaagagt |
228 |
Q |
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| T |
43104011 |
-atttgatgcctagaatgaactttgcattgagtgatttagtatctaaaaattcaaatgacattaaggcacatgtacatggttggagagatggagaggagc |
43103913 |
T |
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| Q |
229 |
ttgagaaagttatgcttcatatcatnnnnnnncctaatattggtaaagggaacattgttgatccaaaaattatctc |
304 |
Q |
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| T |
43103912 |
ttgagaatgttctgcttcatattatcaacaaagctaatattggtaaagggaacattgttggtccaaaaattatctc |
43103837 |
T |
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