View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21423_low_13 (Length: 309)
Name: NF21423_low_13
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21423_low_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 11369059 - 11368763
Alignment:
| Q |
14 |
gaacatgtgaatacgactatctaattttgttatccagtggttaaaaagagtggcagactgaaacttagctttggtgaggatgaaagttagcaatgaaccc |
113 |
Q |
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| T |
11369059 |
gaacatgtgaatacgactatctaattttgttatccagtggttaaaaagagtggcagactgaaacttagctttggtgaggatgaaagttagcaatgaaccc |
11368960 |
T |
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| Q |
114 |
gacgtccaatcatttatgatcattcataaagagagcgg-tcaaacaactaatttttaaaaactgaaataagaaatcttgcattgctaattttaacctaca |
212 |
Q |
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| T |
11368959 |
gacgtccaatcatttatgatcattcataaagagggcggatcaaacaactaatttttaaaaactgaaataagaaatcttgcattgctaattttaacctaca |
11368860 |
T |
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| Q |
213 |
tccaatcctttattatcattcacattgaacagggtagacaaaacaaaaacttaatcattgcaacttaccataataaacattgaacttggagaccaaa |
309 |
Q |
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| T |
11368859 |
tccaatcctttattatcattcacattgaacagggtagacaaaacaaaaacttaatcattgtaacttaccataataaacattgagcttggagaccaaa |
11368763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 11369124 - 11369062
Alignment:
| Q |
14 |
gaacatgtgaatacgactatctaattttgttatccagtggttaaaaagagtggcagactgaaa |
76 |
Q |
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| T |
11369124 |
gaacatgtgaatacgactatctaattttgttatctagtggttagaaagagtggcagactgaaa |
11369062 |
T |
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