View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21423_low_16 (Length: 286)
Name: NF21423_low_16
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21423_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 37305610 - 37305362
Alignment:
| Q |
20 |
catgaatacatcagccagcatcaaatgcttgtgataatatttacatatcacataatagggtcttaaataaactatgaaagtaatagggtcaaacaagata |
119 |
Q |
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| T |
37305610 |
catgaatacatcagccagcatcaaatgcttgtgataatatttacatatcacataatagggtcttaaataaactatgaaagtaatagggtcaaacaagata |
37305511 |
T |
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| Q |
120 |
ttttaaatagataccattcattatttgctaaagcatcaagaagagttgacttcccactaccagaaagacccattatagctaagaattgtcctggttttgc |
219 |
Q |
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| T |
37305510 |
ttttaaatagataccattcattatttgctaaagcatcaagaagagttgacttcccactaccagaaagacccattatagctaagaattgtcctggttttgc |
37305411 |
T |
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| Q |
220 |
atagccttttagaccttgaagtattggttttcttccatttgaaatagtc |
268 |
Q |
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| T |
37305410 |
atagccttttagaccttgaagtattggttttcttccatttgaaatagtc |
37305362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 258
Target Start/End: Original strand, 37347945 - 37348058
Alignment:
| Q |
145 |
tgctaaagcatcaagaagagttgacttcccactaccagaaagacccattatagctaagaattgtcctggttttgcatagccttttagaccttgaagtatt |
244 |
Q |
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| T |
37347945 |
tgctaaagcatcaagaagtgtagattttccacaaccagaaggacccataatagccaaaagctgagctggttttgcataaccagttagaccctgaagaatt |
37348044 |
T |
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| Q |
245 |
ggttttcttccatt |
258 |
Q |
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| T |
37348045 |
gatttgctttcatt |
37348058 |
T |
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