View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21423_low_2 (Length: 499)
Name: NF21423_low_2
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21423_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 9454341 - 9453865
Alignment:
| Q |
18 |
tatagttggtgctgcatttggaggatatatgaatgacaagatgggaaggaagaaaactattttaatggctgatgtggtgttcgttgcaggtgcattagtt |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9454341 |
tatagttggtgcagcatttggaggatatatgaatgacaagatgggaaggaagaaaactattttaatggcagatgtggtgttcgttgcaggtgcattagtt |
9454242 |
T |
|
| Q |
118 |
atggctgctgctccagctccttgggttatcattatcggaagagttttagttggcttaggagttggtgttgcatccatgactgctcctctatacatctcag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9454241 |
atggctgctgctccagctccttgggttatcattatcggaagagttttagttggcttaggagttggtgttgcatccatgactgctcctctatacatctcag |
9454142 |
T |
|
| Q |
218 |
aagcttcccctgctaagattagaggagcattggtttgcaccaatggtttacttataacaggaggtcaatttctctcttacctcatcaatttggcatttac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9454141 |
aagcttcccctgctaagattagaggagcattggtttgcaccaatggtttacttataacaggaggtcaatttctctcttacctcatcaatttggcatttac |
9454042 |
T |
|
| Q |
318 |
caaggtatgttctatgcttgattgaaagatgtgtagttattgaagttcataacataacacttgaatgatannnnnnnatgcaatcaatttgatttctttt |
417 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
9454041 |
caaggtatgttctatgctggattgaaagacctgtagttattgaagttcataacataacacttgaatgatatttttttatgtcatcaatttgatttctttt |
9453942 |
T |
|
| Q |
418 |
aggctccaggaacatggcgttggatgcttggagtggcagcaatccccgctatagtgcagtttgttttgatgatgtcc |
494 |
Q |
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| T |
9453941 |
aggctccaggaacatggcgttggatgcttggagtggcagcaatccccgctatagtgcagttcgtattgatgttgtcc |
9453865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 9443079 - 9442589
Alignment:
| Q |
18 |
tatagttggtgctgcatttggaggatatatgaatgacaagatgggaaggaagaaaactattttaatggctgatgtggtgttcgttgcaggtgcattagtt |
117 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9443079 |
tataattggtgcagcatttggaggatatatgaatgacaagatgggaaggaagaaaactattttaatggctgatgtggtgttcgttgcaggtgcattagtt |
9442980 |
T |
|
| Q |
118 |
atggctgctgctccagctccttgggttatcattatcggaagagttttagttggcttaggagttggtgttgcatccatgactgctcctctatacatctcag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
9442979 |
atggctgctgctccagctccttgggttatcattatcggaagactcttggttggtttgggagtcggtgctgcatccatgactgctcctctatacatctcag |
9442880 |
T |
|
| Q |
218 |
aagcttcccctgctaagattagaggagcattggt-------ttgcaccaatggtttacttataacaggaggtcaatttctctcttacctcatcaatttgg |
310 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
9442879 |
aagcttcccctgctaagattagaggagcattggtttgccgtttgcaccaatggtttactcataacaggtggtcaatttctctcttacctcatcaatttgg |
9442780 |
T |
|
| Q |
311 |
catttaccaaggtatgttctatgcttg--attgaaagatgtgtagttattgaag----ttcataacataacacttgaatga----tannnnnnnatgcaa |
400 |
Q |
| |
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|||||||||||||||||| || ||| ||| ||| |||||||||||||| ||||||||||||||||||||||| | ||| | |
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| T |
9442779 |
catttaccaaggtatgtt---tgattgaaatttgaagcaatgtagttattgaagttcattcataacataacacttgaatgagatttttgtttttatgtca |
9442683 |
T |
|
| Q |
401 |
tcaatttgatttcttttaggctccaggaacatggcgttggatgcttggagtggcagcaatccccgctatagtgcagtttgttttgatgatgtcc |
494 |
Q |
| |
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|||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| || |||||||| | |||||||| || ||| ||||| |
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| T |
9442682 |
tcaatttgatttgttttaggctcccgggacatggcgttggatgcttggggtggcagcgattcccgctatcatacagtttgtattaatgttgtcc |
9442589 |
T |
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