View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21423_low_21 (Length: 246)

Name: NF21423_low_21
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21423_low_21
NF21423_low_21
[»] chr3 (13 HSPs)
chr3 (19-235)||(26653908-26654124)
chr3 (33-235)||(20007414-20007616)
chr3 (30-234)||(20015344-20015548)
chr3 (30-227)||(26647775-26647972)
chr3 (26-234)||(19951891-19952099)
chr3 (19-119)||(20046880-20046980)
chr3 (169-234)||(20033477-20033542)
chr3 (97-234)||(19839231-19839368)
chr3 (149-234)||(20035746-20035831)
chr3 (152-219)||(20006412-20006479)
chr3 (96-234)||(19956921-19957059)
chr3 (176-234)||(19832738-19832796)
chr3 (30-62)||(19832641-19832673)
[»] chr5 (2 HSPs)
chr5 (30-235)||(26354069-26354274)
chr5 (41-235)||(9815816-9816010)
[»] chr1 (2 HSPs)
chr1 (72-210)||(1718033-1718171)
chr1 (63-103)||(38483779-38483819)
[»] chr7 (6 HSPs)
chr7 (24-153)||(12519019-12519148)
chr7 (19-160)||(12582022-12582163)
chr7 (24-160)||(12495208-12495344)
chr7 (24-153)||(12579312-12579441)
chr7 (19-160)||(12497908-12498049)
chr7 (19-160)||(12521773-12521914)
[»] chr4 (1 HSPs)
chr4 (27-160)||(6396998-6397131)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 26653908 - 26654124
Alignment:
Q  19 atgtcaccatgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaag 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26653908 atgtcatcatgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaaacggaagagaagtgtgagttcaag 26654007  T
Q  119 gaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttgga 218  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| ||||| ||||    
T  26654008 gaaacctagagctcatgtagggaaagctagcaaaagtggtgtcgattttagtgttccacctggatttcctcccaatcttgttgacactcatatttatgga 26654107  T
Q  219 aaattttgtgatgatgt 235  Q
    |||||||||| ||||||    
T  26654108 aaattttgtgctgatgt 26654124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 20007616 - 20007414
Alignment:
Q  33 tatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaaggaaacctagagctc 132  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||  | |||||||| || |||| |||    
T  20007616 tatgcaaagtggtggaagcaagtggtattgggtcatggcgattttgttaagaacgttgtgaagcggaagagaagtgcaatttcaaggagacatagatctc 20007517  T
Q  133 atgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttggaaaattttgtgatga 232  Q
    |||||||  || ||| || |||| | || ||| || |||||||||||||||||||||||||| || ||||  ||||| ||||||||||||||||||||||    
T  20007516 atgtaggacaatctaacagaagttggattgatgttggtgttccacctggatttcctcccaatcttgttgatgctcttgtttttggaaaattttgtgatga 20007417  T
Q  233 tgt 235  Q
    |||    
T  20007416 tgt 20007414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 234
Target Start/End: Complemental strand, 20015548 - 20015344
Alignment:
Q  30 cgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaaggaaacctagag 129  Q
    |||||||||| |||||||||||||  ||||||||||||  |||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||     
T  20015548 cgttatgcaatgtggtggaagcaatcggtattgggtcacagagattttgttaagaacattgtgaagcggaagagaagtgaaagttcaaggaaacatagac 20015449  T
Q  130 ctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttggaaaattttgtga 229  Q
    ||||| |||| ||| ||| || |||  |||  ||| || |||||||||||||||||  ||||||| || |||||  |||||  | |||||||||||| ||    
T  20015448 ctcatctaggaaaaactaacagaagcagtaatgatgttggtgttccacctggattttgtcccaatcttgttgaccttcttaagtatggaaaattttgcga 20015349  T
Q  230 tgatg 234  Q
    |||||    
T  20015348 tgatg 20015344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 26647775 - 26647972
Alignment:
Q  30 cgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaaggaaacctagag 129  Q
    |||||||||| ||||||||| |||   |||||||||| ||  |||||||||| ||| |||||| ||  |||  ||||||  ||||||||||||| |||||    
T  26647775 cgttatgcaaggtggtggaaacaatcagtattgggtcgtgatgattttgttatgaaaattgtgcagaagaaacgaagtgcaagttcaaggaaacatagag 26647874  T
Q  130 ctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttggaaaattttgt 227  Q
     |  |||||| |||| || || ||||||||  ||| || ||||||| ||||| |||||||||||| || |||||||||||||||||||||||||||||    
T  26647875 tttgtgtaggaaaagataacataagtggtaatgatgttggtgttccccctggttttcctcccaatcttgttgacactcttatttttggaaaattttgt 26647972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 19951891 - 19952099
Alignment:
Q  26 catgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaaggaaacct 125  Q
    |||||||||||||||||||||| |||||   ||||||| |    || ||||||||||||| |||||| ||| ||| |||| |   ||| |||| |||  |    
T  19951891 catgcgttatgcaaagtggtgggagcaatcagtattggattgcagaaattttgttaagaatattgtgcagcagaaaagaactccaagtccaagaaaagat 19951990  T
Q  126 agagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttggaaaatttt 225  Q
    ||| |||||||||| ||||||| || ||||||||  | | || |||||||||||||||||||| |||||  | |||| |||||| | |||||||| ||||    
T  19951991 agacctcatgtaggaaaagctaacataagtggtaatgttgttggtgttccacctggatttcctaccaattgtgttgaaactcttgtctttggaaattttt 19952090  T
Q  226 gtgatgatg 234  Q
    |||||||||    
T  19952091 gtgatgatg 19952099  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 20046880 - 20046980
Alignment:
Q  19 atgtcaccatgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaag 118  Q
    |||| ||||||||||||| ||||||||||||||||  ||| ||||||| ||||||||| ||| |||| |||||||| ||||| |||||||||| ||||||    
T  20046880 atgttaccatgcgttatgtaaagtggtggaagcaatcggtgttgggtcgtggagatttcgttgagaaaattgtgaatcggaatagaagtgtgaattcaag 20046979  T
Q  119 g 119  Q
    |    
T  20046980 g 20046980  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 20033542 - 20033477
Alignment:
Q  169 gtgttccacctggatttcctcccaatattattgacactcttatttttggaaaattttgtgatgatg 234  Q
    ||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||    
T  20033542 gtgttgcacctggatttcctcccaatcttgttgacactcttatgtttggaaaattttgtgatgatg 20033477  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 19839231 - 19839368
Alignment:
Q  97 ggaagagaagtgtgagttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatat 196  Q
    |||||||||||   ||||||||||| | |||| |||||||||| ||   || || ||||||||| ||  || |||||| |||||||||| |||||||| |    
T  19839231 ggaagagaagttcaagttcaaggaagcgtagacctcatgtaggaaagtttaacataagtggtattgaggtttgtgttcaacctggattttctcccaatct 19839330  T
Q  197 tattgacactcttatttttggaaaattttgtgatgatg 234  Q
      |||| ||||||| |||||||||| ||||||||||||    
T  19839331 ggttgatactcttacttttggaaaagtttgtgatgatg 19839368  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 20035831 - 20035746
Alignment:
Q  149 caaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttggaaaattttgtgatgatg 234  Q
    |||||||||||| ||  || ||||||  ||||||||| |||||||| || |||| |||||||||||||||||  ||||||||||||    
T  20035831 caaaagtggtattgaagtttgtgttcagcctggattttctcccaatcttgttgatactcttatttttggaaatgtttgtgatgatg 20035746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 20006479 - 20006412
Alignment:
Q  152 aagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttggaa 219  Q
    ||||||||| ||| || ||||||||  |||||||||||||||| || ||| |||||||||||||||||    
T  20006479 aagtggtattgatgttggtgttccagatggatttcctcccaatcttgttggcactcttatttttggaa 20006412  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 19956921 - 19957059
Alignment:
Q  96 cggaagagaagtgtgagttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaata 195  Q
    ||||||||||||   ||||||||||| | |||| |||| ||||| ||   || || ||||||||| ||  || |||||| |||||||||| ||||||||     
T  19956921 cggaagagaagttcaagttcaaggaagcgtagacctcacgtaggaaagtttaacagaagtggtatggaggtttgtgttcaacctggattttctcccaatc 19957020  T
Q  196 ttattgacactcttatttttggaaaattttgtgatgatg 234  Q
    || |||| ||||||| ||||| |||  ||||||||||||    
T  19957021 ttgttgatactcttacttttgaaaatgtttgtgatgatg 19957059  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 19832738 - 19832796
Alignment:
Q  176 acctggatttcctcccaatattattgacactcttatttttggaaaattttgtgatgatg 234  Q
    |||||||||| |||||||| || |||| |||| |||||||| |||| ||||||||||||    
T  19832738 acctggattttctcccaatcttgttgatactcctatttttgaaaaagtttgtgatgatg 19832796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 19832641 - 19832673
Alignment:
Q  30 cgttatgcaaagtggtggaagcaactggtattg 62  Q
    |||||||||| ||||||||||||||||||||||    
T  19832641 cgttatgcaaggtggtggaagcaactggtattg 19832673  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 26354274 - 26354069
Alignment:
Q  30 cgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaaggaaacctagag 129  Q
    |||||||||| |||||||| ||||    ||||||||||||  ||||||||||| |||||||||||||||||||||||||  || ||||||||||  ||||    
T  26354274 cgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaagctcaaggaaacacagag 26354175  T
Q  130 ctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttggaaaattttgtga 229  Q
    ||||||| || ||| ||| || ||||  ||  ||| || |||||||||||||||||||||||||| || |||||| ||||| || |  ||| ||||||||    
T  26354174 ctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttcctcccaatcttgttgacattcttaattatcaaaatttttgtga 26354075  T
Q  230 tgatgt 235  Q
    ||||||    
T  26354074 tgatgt 26354069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 9815816 - 9816010
Alignment:
Q  41 gtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaaggaaacctagagctcatgtaggg 140  Q
    |||||||||||||  ||||||||||||||  ||||||||| ||||||||||||||||||||||||||   |||||||||||    ||| ||||||||||     
T  9815816 gtggtggaagcaatcggtattgggtcatgtcgattttgttcagaacattgtgaagcggaagagaagtcaaagttcaaggaagtacagatctcatgtagga 9815915  T
Q  141 aaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttggaaaattttgtgatgatgt 235  Q
    |||  |  || |||| |||  ||| || || ||||||||| ||||||||||||| || |||||  ||||| | |||||||  |||||| ||||||    
T  9815916 aaaattgacagaagttgtaatgatgttggttttccacctgaatttcctcccaatcttgttgaccttcttaatgttggaaagctttgtgttgatgt 9816010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 1718033 - 1718171
Alignment:
Q  72 gattttgttaagaacattgtgaagcggaagagaagtgtgagttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtg 171  Q
    |||||||||||||| | |||| ||| ||||||| |||   |||||| ||||||||||||| ||||||| ||||||| |||||||||||  ||| || |||    
T  1718033 gattttgttaagaaaagtgtgcagcagaagagatgtgcatgttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtg 1718132  T
Q  172 ttccacctggatttcctcccaatattattgacactctta 210  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  1718133 ttccacctggatttcctcccaatcttgttgacactctta 1718171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 38483779 - 38483819
Alignment:
Q  63 ggtcatggagattttgttaagaacattgtgaagcggaagag 103  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  38483779 ggtcatggcgattttgttaagaacattgtgaagtggaagag 38483819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 12519148 - 12519019
Alignment:
Q  24 accatgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaaggaaac 123  Q
    ||||||||||||| ||||||||||||||||  | | |||||||||||||||||||||||||| |||||||||| |||||||||| |||| |||||||||     
T  12519148 accatgcgttatgtaaagtggtggaagcaatcgatgttgggtcatggagattttgttaagaagattgtgaagcagaagagaagtttgagctcaaggaaat 12519049  T
Q  124 ctagagctcatgtagggaaagctagcaaaa 153  Q
     || | ||| |||||| ||||||| |||||    
T  12519048 gtaaaactcgtgtaggcaaagctaacaaaa 12519019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 12582022 - 12582163
Alignment:
Q  19 atgtcaccatgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaag 118  Q
    |||| ||||||| |||||||||||||||||||||| |||| || ||||||||||||||  ||| ||| |||||||||||||||||| |||||| ||||||    
T  12582022 atgttaccatgcattatgcaaagtggtggaagcaattggtgttaggtcatggagatttcattatgaagattgtgaagcggaagagaggtgtgaattcaag 12582121  T
Q  119 gaaacctagagctcatgtagggaaagctagcaaaagtggtat 160  Q
    ||||  || | ||| |||||| ||||||| |||||| |||||    
T  12582122 gaaatgtaaaactcgtgtaggaaaagctaacaaaagcggtat 12582163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 12495344 - 12495208
Alignment:
Q  24 accatgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaaggaaac 123  Q
    ||||||||||||| ||||| ||||||||||  | | |||||||||||||||||||||||||| |||||||||| |||||||||| |||| |||||||||     
T  12495344 accatgcgttatgtaaagttgtggaagcaatcgatgttgggtcatggagattttgttaagaagattgtgaagcagaagagaagtttgagctcaaggaaat 12495245  T
Q  124 ctagagctcatgtagggaaagctagcaaaagtggtat 160  Q
     || | ||| |||||| ||||||| ||||| ||||||    
T  12495244 gtaaaactcgtgtaggaaaagctaacaaaaatggtat 12495208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 12579441 - 12579312
Alignment:
Q  24 accatgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaaggaaac 123  Q
    ||||||||||||| ||||||||||||||||    | |||||||||| |||||| |||||||| |||||||||| |||||||||| |||| |||||||||     
T  12579441 accatgcgttatgtaaagtggtggaagcaatcaatgttgggtcatgaagatttcgttaagaagattgtgaagcagaagagaagtttgagctcaaggaaat 12579342  T
Q  124 ctagagctcatgtagggaaagctagcaaaa 153  Q
     || | |||||||||| ||||||| |||||    
T  12579341 gtaaaactcatgtaggaaaagctaacaaaa 12579312  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 12497908 - 12498049
Alignment:
Q  19 atgtcaccatgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaag 118  Q
    |||| ||||||| ||||| |||||||||||||||| |||| || |||||| |||||||  ||| ||| |||||||||| ||||||| || ||| || |||    
T  12497908 atgtgaccatgcattatgtaaagtggtggaagcaattggtgttaggtcatagagatttcattatgaagattgtgaagcagaagagaggtatgaattaaag 12498007  T
Q  119 gaaacctagagctcatgtagggaaagctagcaaaagtggtat 160  Q
    ||||  || ||||| |||||| |||| ||||||||| |||||    
T  12498008 gaaatgtaaagctcgtgtaggaaaagatagcaaaagcggtat 12498049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 12521773 - 12521914
Alignment:
Q  19 atgtcaccatgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaag 118  Q
    |||| ||||||| ||||| |||||||||||||||| |||| || |||||| |||||||  ||| ||| |||||||||| ||||||| || ||| || |||    
T  12521773 atgtgaccatgcattatgtaaagtggtggaagcaattggtgttaggtcatagagatttcattatgaagattgtgaagcagaagagaggtatgaattaaag 12521872  T
Q  119 gaaacctagagctcatgtagggaaagctagcaaaagtggtat 160  Q
    ||||  || | ||| |||||| ||||||| |||||| |||||    
T  12521873 gaaatgtaaaactcgtgtaggaaaagctaacaaaagcggtat 12521914  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 6397131 - 6396998
Alignment:
Q  27 atgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaacattgtgaagcggaagagaagtgtgagttcaaggaaaccta 126  Q
    |||| |||||||||||||| |||||||  ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||  ||    
T  6397131 atgcattatgcaaagtggtagaagcaatcggtgttaggtcatggagattttgttaagaagattgtgaagcggaagagaagtgtgattttaaggaaatgta 6397032  T
Q  127 gagctcatgtagggaaagctagcaaaagtggtat 160  Q
     | ||| |||  | ||||||| ||||||||||||    
T  6397031 aaactcgtgttagaaaagctaacaaaagtggtat 6396998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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