View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21423_low_25 (Length: 237)

Name: NF21423_low_25
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21423_low_25
NF21423_low_25
[»] chr6 (15 HSPs)
chr6 (1-220)||(28140501-28140720)
chr6 (34-219)||(26937996-26938181)
chr6 (13-219)||(28235532-28235738)
chr6 (34-219)||(26812495-26812680)
chr6 (34-219)||(28182085-28182270)
chr6 (63-219)||(28326445-28326601)
chr6 (63-219)||(28504081-28504237)
chr6 (34-219)||(28227919-28228104)
chr6 (34-206)||(26950723-26950895)
chr6 (1-219)||(28186360-28186579)
chr6 (78-219)||(25074834-25074975)
chr6 (63-203)||(28243778-28243918)
chr6 (71-119)||(29523097-29523145)
chr6 (76-206)||(26975931-26976061)
chr6 (187-219)||(27426795-27426827)
[»] chr1 (1 HSPs)
chr1 (34-206)||(26136868-26137040)
[»] chr2 (2 HSPs)
chr2 (34-219)||(17992245-17992430)
chr2 (5-135)||(3280710-3280840)
[»] scaffold0038 (3 HSPs)
scaffold0038 (13-219)||(35694-35900)
scaffold0038 (34-219)||(28417-28602)
scaffold0038 (63-203)||(43940-44080)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-219)||(57291-57509)
[»] chr4 (2 HSPs)
chr4 (34-219)||(5089980-5090165)
chr4 (187-219)||(18074728-18074760)
[»] chr5 (1 HSPs)
chr5 (31-215)||(16691838-16692022)
[»] scaffold0003 (1 HSPs)
scaffold0003 (187-219)||(60536-60568)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28140720 - 28140501
Alignment:
Q  1 ttatttttaaatgccttccatttcagcaactctagagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28140720 ttatttttaaatgccttccatttcagcaactctagagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaat 28140621  T
Q  101 gtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28140620 gtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgag 28140521  T
Q  201 aatcaaaagaaccttcttta 220  Q
    ||||||||||||||||||||    
T  28140520 aatcaaaagaaccttcttta 28140501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 26938181 - 26937996
Alignment:
Q  34 agagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactac 133  Q
    |||||||||||||  ||||| ||||||| | ||||  |||| |||||||||||||||| ||||||||||||||||||||| ||||| |  ||    || |    
T  26938181 agagcttcttcctcctttaagccatctactacatatattctttcaatcccatgacatgatagcaaatgtttgtctcgagtggtaacaatgactttgcttc 26938082  T
Q  134 catgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    ||||||||||||||||||| ||||||   | | ||| |||||| || | ||||||||| || || ||||||||||  |||||||||    
T  26938081 catgaccaagccaattaggttctccaattatagcctgcaactgcttcaattcatcaacatcgtcaagaatcaaaatgaccttcttt 26937996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 28235738 - 28235532
Alignment:
Q  13 gccttccatttcagcaactctagagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgag 112  Q
    ||||||||  ||| ||| || |||||||| | || |||||||  ||||| ||| || ||||| ||||||||||||| ||||||||| |||||||||||||    
T  28235738 gccttccacctcaacaattcaagagcttcgttctcatttaacttatctatttcgtacgttctttcaatcccatgacttgctagcaattgtttgtctcgag 28235639  T
Q  113 ttgtaacgacaacccgactaccatgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaac 212  Q
    | |||| ||  ||   ||| ||| |||||| ||||| |   ||||| |||||||||| ||| || |||||||| | ||| ||||| |||||||| |||||    
T  28235638 tggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaattgctttagttcgtgaacatcatctagaatcaacagaac 28235539  T
Q  213 cttcttt 219  Q
    |||||||    
T  28235538 cttcttt 28235532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 26812680 - 26812495
Alignment:
Q  34 agagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactac 133  Q
    ||||||||||  | |||||| |||||||  |||||| ||||    ||||||||||||| |||||||||| |||||||||| |||| ||  || | ||| |    
T  26812680 agagcttctttgtcatttaatccatctaagtcataaattctagttatcccatgacatgatagcaaatgtctgtctcgagtggtaatgatgactctacttc 26812581  T
Q  134 catgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    || |||| ||||||  ||| |||||| ||||||||||||| || ||| |||  ||||| |||||||||||||| | ||| ||||||    
T  26812580 caggaccgagccaaccaggctctccaaccaaaaccttcaattgctttggtttgtcaacatcatcgagaatcaacaaaactttcttt 26812495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 28182270 - 28182085
Alignment:
Q  34 agagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactac 133  Q
    |||||||||| || |||||||  ||||| |||||| | ||| ||||||||||||| | ||||||| |||| ||||||||| |||| ||  ||   |||||    
T  28182270 agagcttctttctcatttaacttatctatttcatatgctctttcaatcccatgacctactagcaattgttcgtctcgagtggtaatgatcactttactac 28182171  T
Q  134 catgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    || |||||| ||||| |    ||||||||||||||| ||| || || ||||| | ||| ||||| |||||||| ||||||||||||    
T  28182170 caggaccaaaccaatcaattcctccagccaaaacctgcaattgcttcagttcgtgaacatcatctagaatcaatagaaccttcttt 28182085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 28326601 - 28326445
Alignment:
Q  63 ttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagcc 162  Q
    |||||| | ||| |||||||| |||| |  ||||||||||||||||||||| |||||||  || | ||| ||| |||| | ||||| | |  ||||||||    
T  28326601 ttcatatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagcc 28326502  T
Q  163 aaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    ||||||| ||| || || ||||| | ||| |||||||||||||| ||||||||||||    
T  28326501 aaaacctgcaattgcttcagttcgtgaacatcatcgagaatcaacagaaccttcttt 28326445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 28504237 - 28504081
Alignment:
Q  63 ttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagcc 162  Q
    |||||| | ||| |||||||| |||| |  ||||||||||||||||||||| |||||||  || | ||| ||| |||| | ||||| | |  ||||||||    
T  28504237 ttcatatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagcc 28504138  T
Q  163 aaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    ||||||| ||| || || ||||| | ||| |||||||||||||| ||||||||||||    
T  28504137 aaaacctgcaattgcttcagttcgtgaacatcatcgagaatcaacagaaccttcttt 28504081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 28228104 - 28227919
Alignment:
Q  34 agagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactac 133  Q
    |||||||| | || |||||||  ||||| |||||| | ||| ||||||||||||| ||||||||| ||||||| |||||| |||| ||  ||   ||| |    
T  28228104 agagcttcgttctcatttaacttatctatttcatatgctctttcaatcccatgacttgctagcaattgtttgtttcgagtggtaatgatcactttacttc 28228005  T
Q  134 catgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    || |||||| ||||| | |  ||||||||||||||  ||| || |||||||  | ||| |||||||||||||| ||||| ||||||    
T  28228004 caggaccaaaccaatcaagtcctccagccaaaacccgcaattgctttagtttgtgaacatcatcgagaatcaatagaactttcttt 28227919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 26950895 - 26950723
Alignment:
Q  34 agagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactac 133  Q
    ||||||| |||||||||||| ||||||  ||||||  || | | |||||||||||||| || |||||||||||| ||||| |||| ||  || |  || |    
T  26950895 agagcttgttccttatttaaaccatctgcttcatatatttttttaatcccatgacatgataacaaatgtttgtcacgagtggtaatgatgactctgctgc 26950796  T
Q  134 catgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaa 206  Q
    || |||||||||||  ||| ||||||  |||||||| ||| || |||| ||  ||||| ||||||||||||||    
T  26950795 cacgaccaagccaaccaggctctccaatcaaaacctgcaattgctttattttgtcaacatcatcgagaatcaa 26950723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 28186579 - 28186360
Alignment:
Q  1 ttatttttaaatgccttccatttcagcaactctagagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaat 100  Q
    |||||||| || ||||||||  ||| ||| || |||||||||| || |||||||  || || || ||| | ||| ||||||||||||   |||||||| |    
T  28186579 ttattttttaaagccttccacgtcaacaattcaagagcttctttctcatttaacttatgtaatttatatgctctttcaatcccatgatgagctagcaatt 28186480  T
Q  101 gtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagccaaaaccttcaact-gttttagttcatcaacgtcatcga 199  Q
    ||||||||||||| |||| ||  ||   ||||||| |||||| ||||  |    ||||||||||||| | ||||| | |||||||| | ||| |||||||    
T  28186479 gtttgtctcgagtggtaatgatcacaatactaccaggaccaaaccaacgaaatcctccagccaaaacttccaactggctttagttcgtgaacatcatcga 28186380  T
Q  200 gaatcaaaagaaccttcttt 219  Q
    ||||||| | ||||||||||    
T  28186379 gaatcaacaaaaccttcttt 28186360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 25074975 - 25074834
Alignment:
Q  78 aatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagccaaaaccttcaactgt 177  Q
    |||||||||| ||| || |||||||||||||||||| |||| ||  || |  || ||| |||| |||||  |||| |||||  ||||||||| ||| ||     
T  25074975 aatcccatgagatgataacaaatgtttgtctcgagtggtaatgatgactctgctgccacgaccgagccagctaggctctccgaccaaaacctgcaattgc 25074876  T
Q  178 tttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    |||||||  |||| ||||||||||||||| | ||| ||||||    
T  25074875 tttagtttgtcaatgtcatcgagaatcaacaaaactttcttt 25074834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 28243918 - 28243778
Alignment:
Q  63 ttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagcc 162  Q
    |||||| | ||| ||||||||||||| |  |||||||||| |||||||||| |||||||  || | ||||||| |||| | ||||| | |  |||||||     
T  28243918 ttcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatcaagtcctccagct 28243819  T
Q  163 aaaaccttcaactgttttagttcatcaacgtcatcgagaat 203  Q
    ||||||| ||| || || ||||| | ||| |||||||||||    
T  28243818 aaaacctgcaattgcttcagttcgtgaacatcatcgagaat 28243778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 29523145 - 29523097
Alignment:
Q  71 ttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaac 119  Q
    |||| |||||||||||| ||||||||||||||||||| | |||||||||    
T  29523145 ttctttcaatcccatgaaatgctagcaaatgtttgtcgcaagttgtaac 29523097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 26976061 - 26975931
Alignment:
Q  76 tcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagccaaaaccttcaact 175  Q
    ||||||| ||||| || |||||| |||||||||||||| |||| ||  || |  || |||||||||||||||  ||| |||||   |||||||| ||| |    
T  26976061 tcaatccgatgacctgatagcaattgtttgtctcgagtggtaatgatgactctgctgccatgaccaagccaaccaggctctccgatcaaaacctgcaatt 26975962  T
Q  176 gttttagttcatcaacgtcatcgagaatcaa 206  Q
    | |||| ||  |||| |||||||||||||||    
T  26975961 gctttattttgtcaatgtcatcgagaatcaa 26975931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 27426795 - 27426827
Alignment:
Q  187 tcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    ||||||||||||||||||||||||| |||||||    
T  27426795 tcaacgtcatcgagaatcaaaagaatcttcttt 27426827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 26137040 - 26136868
Alignment:
Q  34 agagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactac 133  Q
    |||||||| |||||||||||   ||| | ||||||  |||| | |||||||||||||| |||||||||||||||||| || |||| ||  || | ||| |    
T  26137040 agagcttcatccttatttaagaaatcgacttcatatattcttttaatcccatgacatgatagcaaatgtttgtctcgggtggtaatgatgactctactcc 26136941  T
Q  134 catgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaa 206  Q
    || ||||||||||| |||| |||||| ||||||||| |||||| ||||| |  ||||||||||||||||||||    
T  26136940 caggaccaagccaactaggctctccaaccaaaacctgcaactgctttagcttgtcaacgtcatcgagaatcaa 26136868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 219
Target Start/End: Original strand, 17992245 - 17992430
Alignment:
Q  34 agagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactac 133  Q
    ||||||||||||| |||||| ||||||| ||||||  || | | |||||||||||||| || |||||||||||||||||| |||| ||  || |  || |    
T  17992245 agagcttcttcctcatttaatccatctacttcatatattgttttaatcccatgacatgttaacaaatgtttgtctcgagtggtaatgatgactctgctgc 17992344  T
Q  134 catgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    || |||||||||||  ||| |||||| ||||||||| ||| || |||||||  || | ||||||||||||||| ||||| ||||||    
T  17992345 cacgaccaagccaaccaggctctccaaccaaaacctgcaattgctttagtttgtcgatgtcatcgagaatcaagagaactttcttt 17992430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 3280840 - 3280710
Alignment:
Q  5 ttttaaatgccttccatttcagcaactctagagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgttt 104  Q
    ||||||| ||||||||| | ||||| || || |||||||||||||||||| |||||| |||||| |||   ||||||||||||| || || ||| |||||    
T  3280840 ttttaaaagccttccatgtaagcaattcaagtgcttcttccttatttaactcatctatttcatatgttagttcaatcccatgacttgataacaagtgttt 3280741  T
Q  105 gtctcgagttgtaacgacaacccgactacca 135  Q
    ||||||||| |||| ||  |||| |||||||    
T  3280740 gtctcgagtggtaatgatcaccctactacca 3280710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 35900 - 35694
Alignment:
Q  13 gccttccatttcagcaactctagagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgag 112  Q
    ||||||||  ||| ||| || |||||||| | || |||||||  ||||| ||| || ||||| ||||||||||||| ||||||||| |||||||||||||    
T  35900 gccttccacctcaacaattcaagagcttcgttctcatttaacttatctatttcgtacgttctttcaatcccatgacttgctagcaattgtttgtctcgag 35801  T
Q  113 ttgtaacgacaacccgactaccatgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaac 212  Q
    | |||| ||  ||   ||| ||| |||||| ||||| |   ||||| |||||||||| ||| || |||||||| | ||| ||||| |||||||| |||||    
T  35800 tggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaattgctttagttcgtgaacatcatctagaatcaacagaac 35701  T
Q  213 cttcttt 219  Q
    |||||||    
T  35700 cttcttt 35694  T

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Target: scaffold0038; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 28602 - 28417
Alignment:
Q  34 agagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactac 133  Q
    |||||||| | || |||||||  ||||| |||||| | ||| ||||||||||||| ||||||||| ||||||| |||||| |||| ||  ||   ||| |    
T  28602 agagcttcgttctcatttaacttatctatttcatatgctctttcaatcccatgacttgctagcaattgtttgtttcgagtggtaatgatcactttacttc 28503  T
Q  134 catgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    || |||||| ||||| | |  ||||||||||||||  ||| || |||||||  | ||| |||||||||||||| ||||| ||||||    
T  28502 caggaccaaaccaatcaagtcctccagccaaaacccgcaattgctttagtttgtgaacatcatcgagaatcaatagaactttcttt 28417  T

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Target: scaffold0038; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 44080 - 43940
Alignment:
Q  63 ttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagcc 162  Q
    |||||| | ||| ||||||||||||| |  |||||||||| |||||||||| |||||||  || | ||||||| |||| | ||||| | |  |||||||     
T  44080 ttcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatcaagtcctccagct 43981  T
Q  163 aaaaccttcaactgttttagttcatcaacgtcatcgagaat 203  Q
    ||||||| ||| || || ||||| | ||| |||||||||||    
T  43980 aaaacctgcaattgcttcagttcgtgaacatcatcgagaat 43940  T

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Target: scaffold0019 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 57291 - 57509
Alignment:
Q  1 ttatttttaaatgccttccatttcagcaactctagagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaat 100  Q
    |||||||| || || |||||  ||| ||| || |||||||||| || |||||||  ||||| |||||| | ||| ||||||||||||| ||||||||| |    
T  57291 ttatttttgaaagcattccacctcaacaattcaagagcttctttctcatttaacttatctatttcatatgctctttcaatcccatgacctgctagcaatt 57390  T
Q  101 gtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgag 200  Q
    ||| ||||||||| |||| ||  ||   ||||||| |||||| ||||| | |  |||||||||||||||  || || || || || | ||| ||||||||    
T  57391 gttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgag 57490  T
Q  201 aatcaaaagaaccttcttt 219  Q
    |||||| | ||||||||||    
T  57491 aatcaacaaaaccttcttt 57509  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 219
Target Start/End: Original strand, 5089980 - 5090165
Alignment:
Q  34 agagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactac 133  Q
    |||||||| | || |||||| ||||||| ||| || ||| | |||||||||||||||  |||||| |||||||||||||| |||| ||  || |  || |    
T  5089980 agagcttcgttctcatttaaaccatctacttcgtatgttatatcaatcccatgacattttagcaagtgtttgtctcgagtggtaatgatgactctgctgc 5090079  T
Q  134 catgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    || |||||| ||||| ||| ||||| ||||||||||  |  ||||| ||||  ||||  |||||||||||||||||||| ||||||    
T  5090080 caagaccaaaccaatcaggttctccggccaaaacctgtagttgtttcagtttgtcaatatcatcgagaatcaaaagaactttcttt 5090165  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 18074760 - 18074728
Alignment:
Q  187 tcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    ||||||||||||||||||||||||| |||||||    
T  18074760 tcaacgtcatcgagaatcaaaagaatcttcttt 18074728  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 16692022 - 16691838
Alignment:
Q  31 tctagagcttcttccttatttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgac 130  Q
    ||||||||||||||   |||||| ||||| | ||||||  |||| ||||| ||||||| || ||| || |||||||||||||| |||| ||  || | ||    
T  16692022 tctagagcttcttctccatttaaaccatccacttcatatattctatcaataccatgacttgttagtaagtgtttgtctcgagtggtaatgatgactctac 16691923  T
Q  131 taccatgaccaagccaattagggtctccagccaaaaccttcaactgttttagttcatcaacgtcatcgagaatcaaaagaacctt 215  Q
    | ||| |||||| |||||  || |||||| ||| ||| | ||| || ||| | |||||||| |||||||||||||||||||||||    
T  16691922 ttccaggaccaaaccaatcgggctctccaaccataacttgcaattgcttttgctcatcaacatcatcgagaatcaaaagaacctt 16691838  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 60568 - 60536
Alignment:
Q  187 tcaacgtcatcgagaatcaaaagaaccttcttt 219  Q
    ||||||||||||||||||||||||| |||||||    
T  60568 tcaacgtcatcgagaatcaaaagaatcttcttt 60536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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