View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21423_low_3 (Length: 444)
Name: NF21423_low_3
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21423_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 43132153 - 43132572
Alignment:
| Q |
20 |
atcatcatagtaaattatatggtatcatgacnnnnnnnnacctttgttttgtagggaggccttgctaagagttggtcaacattttgtgattgttaaaaca |
119 |
Q |
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| T |
43132153 |
atcatcatagtaaattatttggtatcatgacttttttt-atctttgttttgtagggaggccttgctaagagtaggtcaacattttgtgattgttaaaaca |
43132251 |
T |
|
| Q |
120 |
cttccaataagtatctactattaccgtttcattgtagatggacaatggacacatgctcctgagtttccatcagatcttgatgattctggttatgtctaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43132252 |
cttccaataagtatctactattaccgtttcattgtagatggacaatggacacatgctcctgagtttccatcagatcttgatgattctggttatgtctaca |
43132351 |
T |
|
| Q |
220 |
atatattggatttgcaggtaattttttgcttagtaacatgatcatcaattcaagttagtatctatcgcgtttatagtaacatcgatattatactgtttta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43132352 |
atatattggatttgcaggtaattttttgcttagtaacatgatcatcaattcaagttagtatctatcgcgtttatagtaacatccatattatactgtttta |
43132451 |
T |
|
| Q |
320 |
ggaatgtgtttgcttatgcttgacggagaatatgtactcggttctaaatcatcttgtccaatatagtctagcgttcaaatcctgagaaattaacgtaccc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43132452 |
ggaatgtgtttgcttatgcttgacggagaatatgtactcggttctaaatcatcttgtccaatatagtctagcgttcaaatcctgagaaattaacgtatcc |
43132551 |
T |
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| Q |
420 |
actaacttagtattatctacc |
440 |
Q |
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|||||||||||| ||| |||| |
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| T |
43132552 |
actaacttagtaatatttacc |
43132572 |
T |
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