View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21423_low_4 (Length: 405)
Name: NF21423_low_4
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21423_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 7961756 - 7961438
Alignment:
| Q |
19 |
gctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggagttctcttactcttcctgtggttttaagggttattgac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7961756 |
gctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggagttctcttactcttcctgtggttttaagggttattgac |
7961657 |
T |
|
| Q |
119 |
tattctttcgttgaatataataactacgaggaaaaaatcatattaatattattagttattatttaagatttatgccattactactatgaagtatgaaagt |
218 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
7961656 |
tattatttcgttgaatataataactacgagggaaaaatcatattaatattattagttattatttaagatttattccattactactatgatgtatgaaagt |
7961557 |
T |
|
| Q |
219 |
ttattataaccaattccttagtttttatcttgcactattcattgtcttaagcacagtttattactattgcatttggtttctcccttctctgcatcttata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
7961556 |
ttattataaccaattccttagtttttatcttgcactattcatcgtcttaagcacaggttaatactattgcatttggtttctcccttctctgcattttata |
7961457 |
T |
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| Q |
319 |
aacagtttattaatactct |
337 |
Q |
| |
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||||| |||||||| |||| |
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| T |
7961456 |
aacaggttattaattctct |
7961438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 219 - 398
Target Start/End: Complemental strand, 7971603 - 7971424
Alignment:
| Q |
219 |
ttattataaccaattccttagtttttatc-ttgcactattcattgtcttaagcacagtttattactattgcatttggtttctcccttctctgcatcttat |
317 |
Q |
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||||||| |||||| ||||||||||| || ||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||||| |||| |
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| T |
7971603 |
ttattatgaccaat-ccttagtttttttccttgcactattcatcatcttaagcacaggttattacttttgcatttgttttctcccttctctgcattttat |
7971505 |
T |
|
| Q |
318 |
aaacagtttattaatactctcaacgctacagaaggaagatagggtaaaaatctctttctgggttttatttgtttcttctct |
398 |
Q |
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|||||| ||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| |
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| T |
7971504 |
aaacaggttattaatactttcaaagctacagaaggaagatatggcaaaaatctctttctgggttttttttgtttcttctct |
7971424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 7972126 - 7971969
Alignment:
| Q |
19 |
gctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggagttctcttactcttcctgtggttttaagggtt-----a |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||| | |
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| T |
7972126 |
gctattgctatagcaaaattgaaggccaatcttcctcaaaacagacatgttactattgtggagctctcatactcttcctgtggtttgaagggttattgta |
7972027 |
T |
|
| Q |
114 |
ttgactattctttcgttgaatataataactacgaggaaaaaatcatattaatattatta |
172 |
Q |
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||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
7972026 |
ttgactattctcttgttgaatataataacta-gaggaaaaaatcataataatattatta |
7971969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 47293551 - 47293613
Alignment:
| Q |
19 |
gctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggag |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||| || ||| |||||||| |
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| T |
47293551 |
gctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggag |
47293613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 56208581 - 56208520
Alignment:
| Q |
19 |
gctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtgga |
80 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||| |
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| T |
56208581 |
gctattgctatagcaaaattgaaggctggtatacctcaagacaaacatgttactgttgtgga |
56208520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 54304319 - 54304359
Alignment:
| Q |
19 |
gctattgctatagcaaaattgaaggccaatattcctcaaaa |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
54304319 |
gctattgctatagcaaaattgaaggccaatatacctcaaaa |
54304359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 45858855 - 45858817
Alignment:
| Q |
19 |
gctattgctatagcaaaattgaaggccaatattcctcaa |
57 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
45858855 |
gctattgctatagccaaattgaaggccaatatacctcaa |
45858817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 35854637 - 35854688
Alignment:
| Q |
19 |
gctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgtta |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||| |||| |
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|
| T |
35854637 |
gctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtta |
35854688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 10521396 - 10521447
Alignment:
| Q |
19 |
gctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgtta |
70 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||||||||| |||| |
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| T |
10521396 |
gctattgctatcgcaaaattcaaggccaatatacctcaaaacaaacaggtta |
10521447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 24357549 - 24357601
Alignment:
| Q |
18 |
agctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgtta |
70 |
Q |
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|
||||||||| ||||||||||||||||||||||| |||||| || |||| |||| |
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| T |
24357549 |
agctattgccatagcaaaattgaaggccaatatacctcaagacgaacaggtta |
24357601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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