View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21423_low_5 (Length: 398)
Name: NF21423_low_5
Description: NF21423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21423_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 4309335 - 4308975
Alignment:
| Q |
1 |
atctcaaagacgctgtctatgttgctgatgaccttttcgaccacatttgtaccaaagctgctactcggaagaacaaggaggtgagtactactaactactt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4309335 |
atctcaaagacgctgtctatgttgctgatgaccttttcgaccacatttgtaccaaagctgctactcggaagaacaaggaggtgagtactactaactactt |
4309236 |
T |
|
| Q |
101 |
ctctccatttttcaattttgaagaaagggatatggtttataagttggaagacatagttgctagacttgaatacattctgaaaatcaataatattcttggt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4309235 |
ctctccatttttcaattttgaagaaagggatatggtttataagttggaagacatagttgctagacttgaatacattctgaaaatcaataatattcttggt |
4309136 |
T |
|
| Q |
201 |
cttcaacatattgcaactcaccactcttgttggagaaattcatcaacttctccagtggcatttaattaaccgcatgaataaactaaaactagaatttgac |
300 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4309135 |
cttcaacatattgcaactcacccctcttgttggagaaattcatcaacttctccagtggcatttaattaaccgcatgtataaactaaaactagaatttgac |
4309036 |
T |
|
| Q |
301 |
gctttgcgcggatttaattttaatttctagtttttatatgataaatctagataaattatac |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4309035 |
gctttgcgcggatttaattttaatttctagtttttatatgataaatctagataaattatac |
4308975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4315319 - 4315093
Alignment:
| Q |
1 |
atctcaaagacgctgtctatgttgctgatgaccttttcgaccacatttgtaccaaagctgctactcggaagaacaaggaggtgagtactact---aacta |
97 |
Q |
| |
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|||||||||| ||||| ||| |||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||| ||||||| || || ||||| |
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| T |
4315319 |
atctcaaagatgctgtttattttgctgatgatcttctcgaccacatttctaccaaagctgctactcagaagaacaagcaggtgagcaccgctgttaacta |
4315220 |
T |
|
| Q |
98 |
cttctctccatttttcaattttgaagaaagggatatggtttataagttggaagacatagttgctagacttgaatacattctgaaaatcaataatattctt |
197 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||||| || |||| |||||||| |
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| T |
4315219 |
cttctctagctttttcaactttgaagaacgggatatggtttgtaagttggaagatatagttgctaaacttgaatacattctcaagttcaaagatattctt |
4315120 |
T |
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| Q |
198 |
ggtcttcaacatattgcaactcaccac |
224 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
4315119 |
ggtcttcaacatattgcaactcaccac |
4315093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4306457 - 4306231
Alignment:
| Q |
1 |
atctcaaagacgctgtctatgttgctgatgaccttttcgaccacatttgtaccaaagctgctactcggaag---aacaaggaggtgagtactactaacta |
97 |
Q |
| |
|
|||||||||| ||||| ||| || ||||||| ||| |||||||||| | |||||||||||| | | ||||| ||||| ||||||||| | |||||| |
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| T |
4306457 |
atctcaaagatgctgtttattttactgatgatcttctcgaccacatctctaccaaagctgcaattgggaaggaaaacaaagaggtgagtgttgttaacta |
4306358 |
T |
|
| Q |
98 |
cttctctccatttttcaattttgaagaaagggatatggtttataagttggaagacatagttgctagacttgaatacattctgaaaatcaataatattctt |
197 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||||| | |||||| ||| |||||||||||||||||||||||||| ||| |||| ||||| || |
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| T |
4306357 |
cttctctcgctttttcaactttgaagaaagagatatggtttgtgagttggtagatatagttgctagacttgaatacattctcaaattcaaagatattttt |
4306258 |
T |
|
| Q |
198 |
ggtcttcaacatattgcaactcaccac |
224 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
4306257 |
ggtcttcaacatattgcaactcaccac |
4306231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4253181 - 4253435
Alignment:
| Q |
1 |
atctcaaagacgctgtctatgttgctgatgaccttttcgaccacatttgtaccaaagctgctactcggaagaacaaggaggtgagtactactaactactt |
100 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||| | ||| |||||| |||||||||||||| | ||| |||||| ||||||||||| |||| || || |
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| T |
4253181 |
atctcaaaggtgttgtctatgtagctgatgaccttcttgacaacatttcaaccaaagctgctacacagaaaaacaagcaggtgagtactgctaattattt |
4253280 |
T |
|
| Q |
101 |
ctctccatttttcaattttgaagaaagggatatggtttataagttggaagacatagttgctagacttgaatacattctgaaaatcaataatattcttggt |
200 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||| ||| |||| ||||| | |||||||||| |||||||| |||||| ||| |||| ||||||||||| |
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| T |
4253281 |
atctcgctttttcaactttgaagaaagggacatgctttgtaagctggaaaatatagttgctaaacttgaatccattctcaaattcaaagatattcttggt |
4253380 |
T |
|
| Q |
201 |
cttcaacatattgcaa---ctcaccactcttgttggagaaattcatcaacttctc |
252 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| ||||||||| |||| |
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| T |
4253381 |
cttcaacatattgcaatcgaacaccactcttcttggagaacttcatcaacctctc |
4253435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 81 - 237
Target Start/End: Original strand, 4246143 - 4246306
Alignment:
| Q |
81 |
gtgagtactactaactacttctctccatttttcaattttgaagaaagggatatggtttataagttggaag----acatagttgctagacttgaatacatt |
176 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||||| |
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|
| T |
4246143 |
gtgagtagtactaactacttctctcgctttttcaactttgaagatagggatatggtttttaagttggaagatatatatagttgctaggcttgaatacatt |
4246242 |
T |
|
| Q |
177 |
ctgaaaatcaataatattcttggtcttcaacatattgcaac---tcaccactcttgttggagaa |
237 |
Q |
| |
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|| ||| |||| |||||||| ||||||||||| ||||||| ||||||||||| |||||||| |
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| T |
4246243 |
ctcaaattcaaagatattcttagtcttcaacatgttgcaactgatcaccactcttcttggagaa |
4246306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 34803333 - 34803114
Alignment:
| Q |
3 |
ctcaaagacgctgtctatgttgctgatgaccttttcgaccacatttgtaccaaagctgc---tactcggaagaacaaggaggtgagtactactaactact |
99 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| || ||||||| ||| ||||| || |||||||||||| ||||||||||||||| ||| |
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| T |
34803333 |
ctcaaagacgctgtttatgtagctgatgaccttttggatcacatttctactaaagccgcaactactcggaagaaaaaggaggtgagtacttcta------ |
34803240 |
T |
|
| Q |
100 |
tctctccatttttcaattttgaagaaagggatatggtttataagttggaagacatagttgctagacttgaatacattctgaaaatcaataatattcttgg |
199 |
Q |
| |
|
|| || ||||||| |||||||||||||||||||||| |||||| ||| |||||| | ||||||||||||||||||| ||| |||| |||||||||| |
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|
| T |
34803239 |
--tcgcc--ttttcaactttgaagaaagggatatggtttttaagttagaaaacatagcttctagacttgaatacattctaaaattcaaagatattcttgg |
34803144 |
T |
|
| Q |
200 |
tcttcaacatattgcaactcaccactcttg |
229 |
Q |
| |
|
||||||||| ||||||| | |||||||||| |
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| T |
34803143 |
tcttcaacacattgcaagtgaccactcttg |
34803114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 41932601 - 41932826
Alignment:
| Q |
1 |
atctcaaagacgctgtctatgttgctgatgaccttttcgaccacatttgtaccaaagctgctactc------ggaagaacaaggag------gtgagtac |
88 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| || ||||| | ||| ||||||||| || |||||||||||||| |||||||| |
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|
| T |
41932601 |
atctcaaagatgctgtctatgttgctgatgacattttggatcacatctctactaaagctgctgctacttcttggaagaacaaggagaagcaggtgagtac |
41932700 |
T |
|
| Q |
89 |
tactaactacttctctccatttttcaattttgaagaaagggatatggtttataagttggaagacatagttgctagacttgaatacattctgaaaatcaat |
188 |
Q |
| |
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| |||||||||||||| |||||||| ||||||||||| |||||| ||| |||||||||| | || | ||||||||||||| |||||| ||| |||| |
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|
| T |
41932701 |
tcttaactacttctctcgctttttcaactttgaagaaagagatatgttttgtaagttggaaaatatcgccgctagacttgaatccattctcaaattcaaa |
41932800 |
T |
|
| Q |
189 |
aatattcttggtcttcaacatattgc |
214 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
41932801 |
gatattcttggtcttcaacatattgc |
41932826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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