View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21424_high_1 (Length: 603)
Name: NF21424_high_1
Description: NF21424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21424_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 568
Target Start/End: Original strand, 52733882 - 52734431
Alignment:
| Q |
16 |
caagcagcatatctgaaactcatttaatttacgtttccgttcaaatctgaattgatttacgccagctcgctccagatcacaaccgtcaatgctccagttg |
115 |
Q |
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| T |
52733882 |
caagcagcatatctgaaactcaattaatttacgtttccgttcaaatctgaattgagttacgccagctcgctccagatcacaaccgtcaatgctccagttg |
52733981 |
T |
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| Q |
116 |
gactcgatctaggtttctcttctctatactttaatttacnnnnnnngtcggtcaatttccaagatctctctctaacctctgcatacttatcgtaatcaat |
215 |
Q |
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| T |
52733982 |
gactcgatctaggtttctct-----atactttaattta--atttttgtcggtcaatttccaagatctct----aacctcttcatacttatcgtaatcaat |
52734070 |
T |
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| Q |
216 |
ggatctttattttcttattgcagatcgagttcattaatatca--------ggatgcaaataccaacgaataatgggatgatagaatgcagtgtttgtcat |
307 |
Q |
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| T |
52734071 |
ggatctttattttcttattgcagatcgagttcattaatatcaatcatataggatgcaaataccaacgaataatgggatgatagaatgcagtgtctgtcat |
52734170 |
T |
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| Q |
308 |
tcaaaattggtatcaccagctgcaacaaaaactgtatcaagggcttatgatcgccacaaaaataggattacttcaaaacaacgtgttcttaacatcttgt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52734171 |
tcaaaattggtatcaccagctgcaacaaaaactgtatcaagggcttatgatcgccacaaaaataggattacttcaaaacaacgtgttcttaacatcttgt |
52734270 |
T |
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| Q |
408 |
tggttggtggtgactgtatgcttgttggtttccagcctattctagtctatatgtccaaagtcgatggcaaattcaatttcagcccaatcagtgttaattt |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52734271 |
tggttggtggtgactgtatgcttgttggtttccagcctattctagtctatatgtccaaagtcgatggcaaattcaatttcagcccaatcagtgttaattt |
52734370 |
T |
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| Q |
508 |
tttgactgagatcactaaggttttctttgctattgttatgcttcttctccaggtattaaaa |
568 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52734371 |
tttgactgagatcactaaggttttctttgctattgttatgcttcttctccaggtaataaaa |
52734431 |
T |
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