View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21424_high_3 (Length: 369)
Name: NF21424_high_3
Description: NF21424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21424_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 8032839 - 8032570
Alignment:
| Q |
1 |
tcttagtttttgtctaaccatatttgcaacaatggtatagactgcgggattgaagtaagtgtaggagctcccactatcaaagataatttgaagaccctta |
100 |
Q |
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| T |
8032839 |
tcttagtttttgtctaaccatattagcaacaatggtatagactggggaactgaagtaagtgtaggagctcccactatcaaagataatttgaagaccctta |
8032740 |
T |
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| Q |
101 |
gcaggagtaggctttccattgaaaaacaaatctactggacctgtgttatagtgttttctgaaacaaacaaaaatatatataaggttacgtgtaagttctt |
200 |
Q |
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| T |
8032739 |
gcaggagtaggctttccattgaaaaacaaatctactggacctgtgttatagtgttttctgaaacaaacaaaaaaatatataaggttacgtgtaagttctt |
8032640 |
T |
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| Q |
201 |
acaagttacgacattctttgtctcaaaatgaaagatccgtgtaaaatggccaaatatatatatttcattt |
270 |
Q |
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| T |
8032639 |
acaagttacgacattctttgtctcaaaatgaaagatccgtgtaaaatggccaaatatatatatttcattt |
8032570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 8022821 - 8022609
Alignment:
| Q |
7 |
tttttgtctaaccatatttgcaacaatggtatagactgcgggattgaagtaagtgtaggagctcccactatcaaagataatttgaagacccttagcagga |
106 |
Q |
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| T |
8022821 |
tttttgtctaaccatattagcaacaatggtatagactcggggactgaagtaagtgtaggagctcccactatcaaagataatttgaagacccttagcagga |
8022722 |
T |
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| Q |
107 |
gtaggctttccattgaaaaacaaatctactggacctgtgttatagtgttttctgaaacaaacaaaaatatatataaggttacgtgtaagttcttacaagt |
206 |
Q |
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| T |
8022721 |
gtaggctttccattgaaaaacaaatctactggacctgtgctatagtgttttctgaaacaaa-aagaaaaaatataagattacgtgtaagttcttataagt |
8022623 |
T |
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| Q |
207 |
tacgacattctttg |
220 |
Q |
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| T |
8022622 |
gacgacattctttg |
8022609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 254 - 341
Target Start/End: Complemental strand, 8022596 - 8022509
Alignment:
| Q |
254 |
atatatatatttcatttatacacatttcttaatccatgtaaaatggccgaatatatcacttattatggacaaagagagtaacatttag |
341 |
Q |
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| T |
8022596 |
atatatatatttcatttatacgcatttcttaatctgtgtaaaatggccgaatatatcacttattatggaaaaggagagtaacgtttag |
8022509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 8032570 - 8032516
Alignment:
| Q |
297 |
tggccgaatatatcacttattatggacaaagagagtaacatttagtccgacactt |
351 |
Q |
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| T |
8032570 |
tggccgaatatatcacttattatggacaaagagagtaacatttagtccgacactt |
8032516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 10329369 - 10329445
Alignment:
| Q |
49 |
attgaagtaagtgtaggagctcccactatcaaagataatttgaagacccttagcaggagtaggctttccattgaaaa |
125 |
Q |
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| T |
10329369 |
attgaagtatgtgtaagagcttccactatcgaaaataaggtcaagacccttaatagtagtaggctttccattgaaaa |
10329445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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