View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21424_high_4 (Length: 298)
Name: NF21424_high_4
Description: NF21424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21424_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 27 - 277
Target Start/End: Original strand, 27428339 - 27428589
Alignment:
| Q |
27 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgataggctttggaacaggaacaactcctcctcaacaaattatg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428339 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgataggctttggaacaggaacaactcctcctcaacaaattatg |
27428438 |
T |
|
| Q |
127 |
cttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtatcaaaggctttagagctag |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27428439 |
cttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtgtcaaaggctttagagctag |
27428538 |
T |
|
| Q |
227 |
gcctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgta |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428539 |
gcctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgta |
27428589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 128 - 277
Target Start/End: Original strand, 27442900 - 27443049
Alignment:
| Q |
128 |
ttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtatcaaaggctttagagctagg |
227 |
Q |
| |
|
||||||| ||||| || |||||||| ||||||||||||||| || | ||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
27442900 |
ttgatgccattgaaataggctacaggcattttgatactgcttctgtctataatactgaagaacctctaggccaagctgtgtcaaaagctttagagctagg |
27442999 |
T |
|
| Q |
228 |
cctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgta |
277 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
27443000 |
cctcgttaaaaatcgcgatgaactgttcgttacttccaagttatggtgta |
27443049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 128 - 277
Target Start/End: Original strand, 27439974 - 27440123
Alignment:
| Q |
128 |
ttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtatcaaaggctttagagctagg |
227 |
Q |
| |
|
||||||| ||| | || |||||||| ||||||||||||||| || | ||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
27439974 |
ttgatgccattaaaataggctacaggcattttgatactgcttctatctataatactgaagaacctctaggccaagctgtgtcaaaagctttagagctagg |
27440073 |
T |
|
| Q |
228 |
cctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgta |
277 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
27440074 |
cctcgttaaaaatcgcgatgaactgttcgttacttccaagttatggtgta |
27440123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 27442781 - 27442853
Alignment:
| Q |
27 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgataggctttggaaca |
99 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27442781 |
gatggaagcaaagaaagttccagaggtgatactaaattcagggaaaaagatgccaatgataggttttggaaca |
27442853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 27439855 - 27439917
Alignment:
| Q |
27 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgatagg |
89 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
27439855 |
gatggaaataaacaaagttccagaggtgatactaaattcagggaaaaatatgccaatgatagg |
27439917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 26933586 - 26933498
Alignment:
| Q |
187 |
gaacctctaggccaagctgtatcaaaggctttagagctaggcctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtg |
275 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||| || || | ||||||||| ||| | ||||||||||||||| ||||||| |
|
|
| T |
26933586 |
gaacctctaggccaagctgtgtcaaaagctctagagctcggacttataaaaaatcgcaatggggttttcattacttccaagctatggtg |
26933498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University