View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21424_low_2 (Length: 464)
Name: NF21424_low_2
Description: NF21424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21424_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 117 - 425
Target Start/End: Original strand, 47432385 - 47432694
Alignment:
| Q |
117 |
aagttttttaatattatcccataggttccctcaataatcctttttaaaatgtgtaagatattaaatatggacatttttattagttaaaatttaaacatta |
216 |
Q |
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| T |
47432385 |
aagttttttaatattatcc-agagattccctcaataatcctttttaaaatgtatcagatattaaatatgaacatttttattagttaaaattcaaacatta |
47432483 |
T |
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| Q |
217 |
attcgtcaatttgtgtgagtataacccctttcgctatactcagctcctgttagtaaatcaagtgcaagtttggtgttaacatatactaataaacttataa |
316 |
Q |
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| T |
47432484 |
attcgtcaatttgtgtgagtatgacccctttcgctatactcagctcctgatagtaaatcaagtgcaagtttggtgttaacatatactaataaacttataa |
47432583 |
T |
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| Q |
317 |
taatctttaattagatcaaaaggttggcaatttttatcaatatcttatctatcatcaaaaccaccaagaggccaacacacattga--atatatgatcact |
414 |
Q |
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| T |
47432584 |
taatctttaattatatcaaaaggttggcaatttttatcaatatcttatctatcatcaaaaccaccaagaggccaacacacattgaatatatatgatcact |
47432683 |
T |
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| Q |
415 |
tctcttataca |
425 |
Q |
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| T |
47432684 |
tctcttataca |
47432694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 19751497 - 19751563
Alignment:
| Q |
25 |
ctgttgttcagtatcccatactttgttgtttcgacaacaccaaatgcaccataacatcattgctatt |
91 |
Q |
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| T |
19751497 |
ctgttgttctgtctcccatgctttgttgttccttcgacgccaaatgcaccatagcatcattgctatt |
19751563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 7120442 - 7120490
Alignment:
| Q |
38 |
tcccatactttgttgtttcgacaacaccaaatgcaccataacatcattg |
86 |
Q |
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| T |
7120442 |
tcccatactttgttgttctgacgtcgccaaatgcaccataacatcattg |
7120490 |
T |
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