View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21425_high_2 (Length: 290)

Name: NF21425_high_2
Description: NF21425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21425_high_2
NF21425_high_2
[»] chr2 (18 HSPs)
chr2 (186-274)||(14940983-14941071)
chr2 (190-274)||(19899034-19899118)
chr2 (188-274)||(13686108-13686194)
chr2 (189-274)||(28716316-28716401)
chr2 (188-274)||(25415028-25415114)
chr2 (193-274)||(41464902-41464983)
chr2 (206-274)||(3810285-3810353)
chr2 (188-274)||(28429396-28429479)
chr2 (188-257)||(35676269-35676338)
chr2 (187-272)||(45093146-45093231)
chr2 (190-275)||(42263945-42264030)
chr2 (186-274)||(36690815-36690905)
chr2 (189-234)||(2752614-2752659)
chr2 (189-274)||(35323474-35323559)
chr2 (189-230)||(24413862-24413903)
chr2 (193-235)||(13685997-13686039)
chr2 (189-274)||(16058375-16058456)
chr2 (210-274)||(40126520-40126584)
[»] chr4 (16 HSPs)
chr4 (188-274)||(18375389-18375475)
chr4 (188-274)||(17847540-17847626)
chr4 (189-274)||(23348112-23348197)
chr4 (189-274)||(54358227-54358312)
chr4 (190-272)||(41878633-41878715)
chr4 (190-274)||(24683191-24683275)
chr4 (190-272)||(37674000-37674082)
chr4 (189-280)||(41497890-41497983)
chr4 (189-274)||(41633332-41633416)
chr4 (189-275)||(47838942-47839027)
chr4 (188-272)||(4512160-4512245)
chr4 (187-231)||(52726030-52726074)
chr4 (189-256)||(54021241-54021308)
chr4 (191-224)||(47282226-47282259)
chr4 (193-235)||(24683080-24683122)
chr4 (245-274)||(47281587-47281616)
[»] chr8 (19 HSPs)
chr8 (189-274)||(36473048-36473133)
chr8 (186-274)||(33888963-33889051)
chr8 (188-271)||(29314117-29314200)
chr8 (189-274)||(15561913-15561998)
chr8 (189-272)||(41322646-41322729)
chr8 (188-274)||(2001762-2001848)
chr8 (191-274)||(11653712-11653795)
chr8 (189-274)||(39112763-39112848)
chr8 (189-269)||(37919508-37919588)
chr8 (188-235)||(4824296-4824343)
chr8 (183-274)||(1005704-1005798)
chr8 (51-114)||(12590392-12590455)
chr8 (187-226)||(13357627-13357666)
chr8 (178-230)||(34392258-34392310)
chr8 (193-235)||(4851737-4851779)
chr8 (193-235)||(34392112-34392154)
chr8 (189-222)||(1416048-1416081)
chr8 (245-274)||(34392223-34392252)
chr8 (186-237)||(8551625-8551679)
[»] chr6 (10 HSPs)
chr6 (189-275)||(7646773-7646859)
chr6 (203-268)||(25935629-25935694)
chr6 (51-120)||(29673471-29673540)
chr6 (189-265)||(12607030-12607107)
chr6 (189-274)||(17366937-17367016)
chr6 (216-274)||(29487541-29487599)
chr6 (51-114)||(29469863-29469926)
chr6 (18-54)||(28478963-28478999)
chr6 (246-274)||(28898438-28898466)
chr6 (18-54)||(29791418-29791454)
[»] chr5 (16 HSPs)
chr5 (188-274)||(4391843-4391929)
chr5 (189-275)||(34286707-34286793)
chr5 (188-274)||(32891289-32891375)
chr5 (189-274)||(5481467-5481552)
chr5 (189-262)||(42148957-42149030)
chr5 (188-274)||(3456867-3456950)
chr5 (191-274)||(37093912-37093995)
chr5 (188-274)||(8692623-8692709)
chr5 (189-274)||(228138-228223)
chr5 (209-274)||(40925950-40926015)
chr5 (205-274)||(31644741-31644812)
chr5 (188-233)||(43141518-43141563)
chr5 (193-235)||(228027-228069)
chr5 (242-272)||(38614232-38614262)
chr5 (225-274)||(35672345-35672394)
chr5 (246-274)||(6614302-6614330)
[»] chr1 (19 HSPs)
chr1 (190-275)||(47550905-47550990)
chr1 (192-274)||(9098571-9098653)
chr1 (188-274)||(16254969-16255055)
chr1 (186-274)||(34476014-34476102)
chr1 (187-274)||(31032694-31032781)
chr1 (188-274)||(45010314-45010400)
chr1 (188-274)||(4624460-4624539)
chr1 (192-260)||(41647356-41647424)
chr1 (188-274)||(1270286-1270372)
chr1 (188-275)||(42480235-42480324)
chr1 (188-274)||(20809062-20809148)
chr1 (189-269)||(44714807-44714887)
chr1 (198-274)||(29095530-29095606)
chr1 (191-274)||(34808051-34808134)
chr1 (204-274)||(2958710-2958775)
chr1 (193-235)||(1270175-1270217)
chr1 (193-235)||(4194770-4194812)
chr1 (193-235)||(20808951-20808993)
chr1 (193-235)||(34475903-34475945)
[»] chr7 (6 HSPs)
chr7 (186-274)||(23991946-23992034)
chr7 (188-274)||(42195492-42195578)
chr7 (188-274)||(8307637-8307724)
chr7 (210-274)||(27425773-27425837)
chr7 (245-274)||(22326973-22327002)
chr7 (226-274)||(17611957-17612005)
[»] chr3 (17 HSPs)
chr3 (188-274)||(23642977-23643063)
chr3 (188-275)||(39145365-39145452)
chr3 (189-275)||(52546856-52546942)
chr3 (191-271)||(45166344-45166424)
chr3 (191-274)||(38176390-38176473)
chr3 (188-274)||(36517629-36517715)
chr3 (188-274)||(50612872-50612958)
chr3 (189-274)||(521763-521848)
chr3 (206-274)||(20912282-20912350)
chr3 (188-274)||(31788420-31788506)
chr3 (188-274)||(51297021-51297109)
chr3 (189-235)||(34624486-34624532)
chr3 (218-274)||(1561283-1561339)
chr3 (193-235)||(50613027-50613069)
chr3 (18-54)||(615348-615384)
chr3 (51-120)||(615447-615518)
chr3 (246-274)||(22650451-22650479)
[»] scaffold0002 (1 HSPs)
scaffold0002 (190-275)||(492780-492865)
[»] scaffold0339 (1 HSPs)
scaffold0339 (188-254)||(13378-13443)
[»] scaffold0012 (1 HSPs)
scaffold0012 (51-121)||(238325-238395)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 14940983 - 14941071
Alignment:
Q  186 ttaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  14940983 ttaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggcaagttttaatttcatgatttatttgttca 14941071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 19899118 - 19899034
Alignment:
Q  190 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19899118 gaaaatgctatttctctagaaaaatagcatcacgaatttttcaagacacaactggcaagttttaattgcatgatttatttgttca 19899034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 13686194 - 13686108
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  13686194 aggaaaatgctatttctctagaaaaatagcatcaagaattttttaagacacaattggcaagttttaattgcatgatttatttgttca 13686108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 28716316 - 28716401
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  28716316 ggaaaatgttatttttctagaaaaatagcatcaagaatttttcaagacacaactggcaagttttaattgcattatttatttgttca 28716401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 25415114 - 25415028
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  25415114 aggaaaatgctatatctctagaaaaatagtataaagaatttttcaagacacagctgataagttttaattgcatgatttatttgttca 25415028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 41464902 - 41464983
Alignment:
Q  193 aatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||    
T  41464902 aatgttatttctctagaaaaataacatcaagaatttttcaagacacagttgacaagttttaattgcatgatttatttgttca 41464983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 3810285 - 3810353
Alignment:
Q  206 tagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  3810285 tagaaaaatagcatcaagaaattttcaagacacagctggcaagttttaattgcatgatttatttgttca 3810353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 28429479 - 28429396
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||   ||||  |||||||||||||||||||||||||||||    
T  28429479 aggaaaatgctatttctttagaaaaatagcatcaagaatttttcatgac---actgacaagttttaattgcatgatttatttgttca 28429396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 35676269 - 35676338
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattg 257  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||||||||||    
T  35676269 aggaaaatgctatttctctagaaaaatagcatcaagattttttttagacacaactggcaagttttaattg 35676338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 45093146 - 45093231
Alignment:
Q  187 taggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgtt 272  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||| |||  ||| || |||||||||||||||||| |||||    
T  45093146 taggaaaatgttatttctctagaaaaatagcatcaagaattttttaagatacagttgggaaattttaattgcatgatttaattgtt 45093231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 42264030 - 42263945
Alignment:
Q  190 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttcat 275  Q
    ||||||| |||||||||| |||||||||||||| | ||||||||||||| || |  ||||||||||||||| ||||||||||||||    
T  42264030 gaaaatgttatttctctaaaaaaatagcatcaaaattttttcaagacacgacagtcaagttttaattgcataatttatttgttcat 42263945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 36690815 - 36690905
Alignment:
Q  186 ttaggaaaatgctatttctctagaaaaatagcatcaaga--atttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||||| |||||||||| ||| ||||  ||||||||||||||| |||  || |||||||| | |||||||||||||||    
T  36690815 ttaggaaaatgctatttctttagaaaaataacattaagaatatttttcaagacacagctgacaaattttaattacttgatttatttgttca 36690905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 2752614 - 2752659
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaag 234  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  2752614 ggaaattgctatttctctagaaaaatagcatcaagaatttttcaag 2752659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 35323474 - 35323559
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||| ||||||||||||||||||| || ||||||||||  |||||||  ||  ||||||||||| |||||||||| ||||||    
T  35323474 ggaaaatgttatttctctagaaaaatagtattaagaattttttcagacacagttgacaagttttaattacatgatttatatgttca 35323559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 24413903 - 24413862
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaattttt 230  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  24413903 ggaaaatgctatttctctagaaaaatagcatcaataattttt 24413862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 13685997 - 13686039
Alignment:
Q  193 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  13685997 aatgctatatctctagaaaaataacatcaagaatttttcaaga 13686039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 16058375 - 16058456
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaa-tttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||  |||||||||| ||||||||||||||||| ||||| ||||||||||    |||||||| ||||||||||||||| ||||    
T  16058375 ggaaaatcttatttctcta-aaaaatagcatcaagaatttttttaagacacaac----aagttttatttgcatgatttatttattca 16058456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 40126520 - 40126584
Alignment:
Q  210 aaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||| ||||||||| |||| ||| ||   || ||||||||| ||||||||||||||||    
T  40126520 aaaatagcatcgagaattttttaagatacagctcacaaattttaattgtatgatttatttgttca 40126584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 18375389 - 18375475
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18375389 aggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagacacaactggcaagttttaattgcatgatttatttgttca 18375475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 17847540 - 17847626
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  17847540 aggaaaatgttatttctctcgaaaaatagcatcaagaatttttcaagacacagttggcaagttttaattgcatgatttatttgttca 17847626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 23348112 - 23348197
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |  |||||||||||||||||||||||||||||    
T  23348112 ggaaaatgctatttctctagaaaaatagcatcaataatttttcaagaaacaaccgacaagttttaattgcatgatttatttgttca 23348197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 54358312 - 54358227
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |  ||| |||||||||||||||||||||||||||||    
T  54358312 ggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagacatagttggcaagttttaattgcatgatttatttgttca 54358227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 41878715 - 41878633
Alignment:
Q  190 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgtt 272  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  41878715 gaaaatgctatttatttagaaaaatagcatcaagaatttttcaagacataactgacaagttttaattgcatgatttatttgtt 41878633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 24683275 - 24683191
Alignment:
Q  190 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||||||  || ||||||||||||||||||||||||||||||    
T  24683275 gaaaatgttatttctttagaaaaatagtatcaagaatttttcaagacacacttgataagttttaattgcatgatttatttgttca 24683191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 37674000 - 37674082
Alignment:
Q  190 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgtt 272  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||   ||  |||||||||||||||||||||||||||    
T  37674000 gaaaatgatatttctctagaaaaatagcatcaagaatttttcaagacacgtgtgacaagttttaattgcatgatttatttgtt 37674082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 41497890 - 41497983
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaac--tggtaagttttaattgcatgatttatttgttcatctcat 280  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||||||||    || ||||||||||||||||||||||||||||||| ||||    
T  41497890 ggaaaatgctatttctctaaaaaaatagcatcaaaaattattcaagacacacagttgataagttttaattgcatgatttatttgttcatttcat 41497983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 41633416 - 41633332
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||  || |||||||| ||| |||||||||||||    
T  41633416 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacaaagctgacaaattttaattacat-atttatttgttca 41633332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 47838942 - 47839027
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttcat 275  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||||||||| ||||| || |||||||||||||| | |||||||||    
T  47838942 ggaacatgctatttctctataaaaatagcatcaagaa-ttttcaagacacagctggtgagatttaattgcatgatgtttttgttcat 47839027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 4512160 - 4512245
Alignment:
Q  188 aggaaaatgctatttctctagaaaa-atagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgtt 272  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| || ||  ||| ||||||||||||||| |||||||||||    
T  4512160 aggaaaatgttatttctctagaaaaaatagcatcaagaatttttcaatactcaggtggcaagttttaattgcatcatttatttgtt 4512245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 52726074 - 52726030
Alignment:
Q  187 taggaaaatgctatttctctagaaaaatagcatcaagaatttttc 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52726074 taggaaaatgctatttctctagaaaaatagcatcaagaatttttc 52726030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 54021241 - 54021308
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaatt 256  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||| | | |||  |||||||||||    
T  54021241 ggaaaatgttatttctctagaaaaatagcatcaagaattttttaagataaagctgacaagttttaatt 54021308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 47282259 - 47282226
Alignment:
Q  191 aaaatgctatttctctagaaaaatagcatcaaga 224  Q
    ||||||||||||||||||||||||||||||||||    
T  47282259 aaaatgctatttctctagaaaaatagcatcaaga 47282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 24683080 - 24683122
Alignment:
Q  193 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  24683080 aatgctatatctctagaaaaataacatcaagaattcttcaaga 24683122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 274
Target Start/End: Original strand, 47281587 - 47281616
Alignment:
Q  245 taagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||||||||||||||||    
T  47281587 taagttttaattgcatgatttatttgttca 47281616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 36473048 - 36473133
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36473048 ggaaaatgctatttctctagaaaaataacatcaagaatttttcaagacacaattggtaagttttaattgcatgatttatttgttca 36473133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 33889051 - 33888963
Alignment:
Q  186 ttaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||| |||||||||||||    
T  33889051 ttaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagaaacaactgacaagttttaattgcataatttatttgttca 33888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 29314200 - 29314117
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgt 271  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  29314200 aggaaaatgctatttctctaaaaaaatagtatcaagaatttttcaagacacagttggtaagttttaattgcattatttatttgt 29314117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 15561913 - 15561998
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||  ||| |||||||||||| ||||||||||||||||    
T  15561913 ggaaaatgctatttatctagaaaaatagcatcaagaatttttcaagatacagttggcaagttttaattgtatgatttatttgttca 15561998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 41322729 - 41322646
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgtt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |  | | ||||||||||||||||||||| |||||    
T  41322729 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacatagttagcaagttttaattgcatgatttaattgtt 41322646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 2001848 - 2001762
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||| |||||||||||||||||||||||||   |||||||||||||| |||  ||||||||||| |||||||||||||||||    
T  2001848 aggaaaatgttatttctctagaaaaatagcatcaaatttttttcaagacacagctgccaagttttaattacatgatttatttgttca 2001762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 11653712 - 11653795
Alignment:
Q  191 aaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||| ||||||| |||||||||||||| |||||||  |||  ||||||||||| |||||||||||||||||    
T  11653712 aaaatgctatttctctacaaaaataacatcaagaattttttaagacacggctgacaagttttaattacatgatttatttgttca 11653795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 39112848 - 39112763
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||  |||||||||||||||||| ||   ||||||||||||||| ||| || ||||||||| ||||||||||||||||    
T  39112848 ggaaaatgctacatctctagaaaaatagcattaaatttttttcaagacacaattggcaaattttaattggatgatttatttgttca 39112763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 37919508 - 37919588
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttattt 269  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| |||||  ||  ||||||||||||| | ||||||||    
T  37919508 ggaaaatgctatttctctagaaaaatagtatcaagaatttatcaaaacacagttgacaagttttaattgcgtaatttattt 37919588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 4824343 - 4824296
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  4824343 aggaaaatgctatttctctagaaaaatagcattaagaatttttcaaga 4824296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 1005798 - 1005704
Alignment:
Q  183 ttattaggaaaatgctatttctctagaaaaa--tagcatcaagaatttttcaagacacaa-ctggtaagttttaattgcatgatttatttgttca 274  Q
    |||| |||||||||||||||||||| |||||  ||||||||| | ||||| ||| ||||| |||  ||||||||||||||| |||||||||||||    
T  1005798 ttataaggaaaatgctatttctctaaaaaaaaatagcatcaaaatttttttaaggcacaaactgacaagttttaattgcataatttatttgttca 1005704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 12590392 - 12590455
Alignment:
Q  51 aattcaagttttagaagaaaatccactgagtaataacgatatggatggtttggcttttcatctt 114  Q
    |||||||||||||||||||||| |  |||||||||| ||||| |||||||||||||||| ||||    
T  12590392 aattcaagttttagaagaaaatactgtgagtaataatgatattgatggtttggcttttcgtctt 12590455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 13357627 - 13357666
Alignment:
Q  187 taggaaaatgctatttctctagaaaaatagcatcaagaat 226  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  13357627 taggaaaatgctatttatctagaaaaatagcatcaagaat 13357666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 34392310 - 34392258
Alignment:
Q  178 taatgttattaggaaaatgctatttctctagaaaaatagcatcaagaattttt 230  Q
    ||||||| | |||||||||||||||||||| |||||||| || ||||||||||    
T  34392310 taatgttgtaaggaaaatgctatttctctaaaaaaatagaattaagaattttt 34392258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 4851737 - 4851779
Alignment:
Q  193 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||||||| |||||||||||||| |||||||||||||| ||||    
T  4851737 aatgctatatctctagaaaaataacatcaagaattttttaaga 4851779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 34392112 - 34392154
Alignment:
Q  193 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||||||| |||||| ||||||| |||||||||||||||||||    
T  34392112 aatgctatatctctaaaaaaataacatcaagaatttttcaaga 34392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 1416048 - 1416081
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaa 222  Q
    |||||||| |||||||||||||||||||||||||    
T  1416048 ggaaaatgttatttctctagaaaaatagcatcaa 1416081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 274
Target Start/End: Complemental strand, 34392252 - 34392223
Alignment:
Q  245 taagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||||||||||||||||    
T  34392252 taagttttaattgcatgatttatttgttca 34392223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 8551679 - 8551625
Alignment:
Q  186 ttaggaaaatgctatttctct---agaaaaatagcatcaagaatttttcaagaca 237  Q
    |||||||||||||||||||||   | ||||||||||| | |||||||||||||||    
T  8551679 ttaggaaaatgctatttctctaaaaaaaaaatagcattatgaatttttcaagaca 8551625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 7646773 - 7646859
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttcat 275  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  7646773 ggaaaatgctatttctctagaaaaatagtatcaggaatttttcaagacacatctggcaagttttaattgcatgatttatttgttcat 7646859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 25935694 - 25935629
Alignment:
Q  203 ctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatt 268  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  25935694 ctctagaaaaatagcatcaagaatttttcaagacacagctggcaagttttaattacatgatttatt 25935629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 29673540 - 29673471
Alignment:
Q  51 aattcaagttttagaagaaaatccactgagtaataacgatatggatggtttggcttttcatcttgaactt 120  Q
    |||||||||||||||||||||| || ||||||||||||||||||||| || ||||||||||||| |||||    
T  29673540 aattcaagttttagaagaaaatacagtgagtaataacgatatggatgattgggcttttcatctttaactt 29673471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 12607030 - 12607107
Alignment:
Q  189 ggaaaatgctatttctctag-aaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgattt 265  Q
    |||||||| | ||||||||| |||||||| ||||||||||||| ||||||||| || |||||||||||||||||||||    
T  12607030 ggaaaatgttgtttctctaggaaaaatagtatcaagaattttttaagacacaattgataagttttaattgcatgattt 12607107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 17367016 - 17366937
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||     | ||||||||||||||||  |||||||||||    
T  17367016 ggaaaatgctatttctctagaaaaatagcatcaa-aatttttcaagacac-----gcaagttttaattgcatgcattatttgttca 17366937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 29487541 - 29487599
Alignment:
Q  216 gcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||| |||||||  |||||||| || |||||||||||||||||||||    
T  29487541 gcatcaagaatttttccagacacagttggtaagtgttgattgcatgatttatttgttca 29487599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 29469863 - 29469926
Alignment:
Q  51 aattcaagttttagaagaaaatccactgagtaataacgatatggatggtttggcttttcatctt 114  Q
    |||||||||||||||||||||| |  |||||||||  |||||| |||||||| |||||||||||    
T  29469863 aattcaagttttagaagaaaatacggtgagtaatagtgatatgaatggtttgtcttttcatctt 29469926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 28478999 - 28478963
Alignment:
Q  18 attacatgatttagtagaggatatggggaaataaatt 54  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  28478999 attacatgatttaatagaggatatggggaaagaaatt 28478963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 28898438 - 28898466
Alignment:
Q  246 aagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||||||||||||    
T  28898438 aagttttaattgcatgatttatttgttca 28898466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 29791454 - 29791418
Alignment:
Q  18 attacatgatttagtagaggatatggggaaataaatt 54  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  29791454 attacatgatttaatagaggatatggggaaagaaatt 29791418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 4391843 - 4391929
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  4391843 aggaaaatgcaatttctctagaaaaatagcatcaagaatttttcaagacacagctggcaagttttaattgcataatttatttgttca 4391929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 275
Target Start/End: Complemental strand, 34286793 - 34286707
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttcat 275  Q
    |||||||| ||||||||||||||||||||||||| | ||||||||||||||||||  || |||||||||||||||||||||||||||    
T  34286793 ggaaaatgttatttctctagaaaaatagcatcaaaattttttcaagacacaactgacaaattttaattgcatgatttatttgttcat 34286707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 32891375 - 32891289
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||  || ||||||||||||||||||||||||||    
T  32891375 aggaaaatgctatttatctagaaaaatagcatcaacaatttttcaagacacagttgacaaattttaattgcatgatttatttgttca 32891289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 5481552 - 5481467
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||  ||||||||||||||||||||||||||||||||| ||||||||  |||||| |||||| |||||||||||||||||||    
T  5481552 ggaaaatattatttctctagaaaaatagcatcaagaattttttaagacacagttggtaaattttaactgcatgatttatttgttca 5481467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 42149030 - 42148957
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatga 262  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  42149030 ggaaaacgctatttctctagaaaaatagtatcaagaatttttcaagacacaactgataaattttaattgcatga 42148957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 3456950 - 3456867
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||| |||||||||||||||||||||||||||   |||||||| |  |||||||||||||||||||||||||||||    
T  3456950 aggaaaatgctatttttctagaaaaatagcatcaagaattttt---gacacaaccgacaagttttaattgcatgatttatttgttca 3456867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 37093912 - 37093995
Alignment:
Q  191 aaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||| |||||||||||||    
T  37093912 aaaatgttatttttctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcataatttatttgttca 37093995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 8692709 - 8692623
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||| |||||||||| |||||||||||||||||| |||||||||||| |||  || ||||||||||||||||||||| ||||    
T  8692709 aggaaaatgttatttctctaaaaaaatagcatcaagaatctttcaagacacagctgacaaattttaattgcatgatttatttattca 8692623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 228223 - 228138
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||| |||||||||||| ||| || | |||||||||||||||||   |||||||||||||||||| ||||||||||    
T  228223 ggaaaatgctatttttctagaaaaataacattaaaattttttcaagacacaacttacaagttttaattgcatgatatatttgttca 228138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 40926015 - 40925950
Alignment:
Q  209 aaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||| |||||||||||||||||||||||||| |||  |||||||||||| ||||||||||||||||    
T  40926015 aaaagtagcatcaagaatttttcaagacacatctgacaagttttaattgtatgatttatttgttca 40925950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 31644812 - 31644741
Alignment:
Q  205 ctagaaaaatagcatcaagaatttttcaagacaca--actggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||| |||||||||||| |||||||||  | |||||||||||||||||||| ||||||||||||    
T  31644812 ctagaaaaatagtatcaagaattttgcaagacacacaattggtaagttttaattgcatggtttatttgttca 31644741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 43141518 - 43141563
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 233  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||    
T  43141518 aggaaaatgttatttctctagaaaaatagcatcaagaattcttcaa 43141563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 228027 - 228069
Alignment:
Q  193 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||| ||| |||||||||||||| |||||||||||||||||||    
T  228027 aatgatatatctctagaaaaataacatcaagaatttttcaaga 228069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 272
Target Start/End: Original strand, 38614232 - 38614262
Alignment:
Q  242 tggtaagttttaattgcatgatttatttgtt 272  Q
    |||||||||||||||||||||||||||||||    
T  38614232 tggtaagttttaattgcatgatttatttgtt 38614262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 35672345 - 35672394
Alignment:
Q  225 atttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||| ||||||||  || ||| ||||||||||||||||||||||||||    
T  35672345 atttttgaagacacagttgataaattttaattgcatgatttatttgttca 35672394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 6614302 - 6614330
Alignment:
Q  246 aagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||||||||||||    
T  6614302 aagttttaattgcatgatttatttgttca 6614330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 47550990 - 47550905
Alignment:
Q  190 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttcat 275  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |||||||    
T  47550990 gaaaatgttatttctctagaaaaatagcatcaagaatttttcaagaaacagctggcaagttttaattgcatgatttatatgttcat 47550905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 9098571 - 9098653
Alignment:
Q  192 aaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||| |||  |||||||||||||||||||||||||||||    
T  9098571 aaatgctttttctctagaaaaatagcatcaagaatttttcaaaacacagctgacaagttttaattgcatgatttatttgttca 9098653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 16255055 - 16254969
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||  |||||||| ||||||||||||||||    
T  16255055 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaatacacaactgacaaaatttaattgtatgatttatttgttca 16254969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 34476102 - 34476014
Alignment:
Q  186 ttaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||  ||||||||||||||||||| |||||||||    
T  34476102 ttaggaaaaggctatttctctagaaaaatagtatcaagaatttttcaagacaaagctgacaagttttaattgcatgattgatttgttca 34476014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 31032694 - 31032781
Alignment:
Q  187 taggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||| |||  ||  |||||||||||||||||||||||||||||    
T  31032694 taggaaaatgttatttttctagaaaaatagcatcaagaatttttcaagatacagttgacaagttttaattgcatgatttatttgttca 31032781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 45010400 - 45010314
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||| ||||| |||  || ||||||||||||||||||||||||||    
T  45010400 aggaagatgttatttctctagaaaaatagcataaagaatttttcaaaacacatctgacaaattttaattgcatgatttatttgttca 45010314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 4624539 - 4624460
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |       |||||||||||||||||||||||||||||    
T  4624539 aggaaaatgctatttctctagaaaaatagcatcaagaattattcaagactc-------aagttttaattgcatgatttatttgttca 4624460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 41647424 - 41647356
Alignment:
Q  192 aaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||||||    
T  41647424 aaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcat 41647356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 1270372 - 1270286
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||||||||  ||  |||||||||||||| ||||||||| ||||    
T  1270372 aggaaactactatttctctagaaaaatagcatcaaaaatttttcaagacacagttgacaagttttaattgcacgatttatttattca 1270286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 42480324 - 42480235
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttca--agacacaactggtaagttttaattgcatgatttatttgttcat 275  Q
    ||||||||| |||||||||||||||||||||||||||||||||||  ||||||| |  | ||||||||||||||| |||||||| |||||    
T  42480324 aggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagagacacagcatgcaagttttaattgcataatttatttattcat 42480235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 20809148 - 20809062
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||| ||   ||| ||||||||||| |||| |||||| |||||    
T  20809148 aggaaaattttatttctctagaaaaatagcatcaagaatttttcaagatacgggtggcaagttttaattacatggtttattcgttca 20809062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 44714807 - 44714887
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttattt 269  Q
    |||||||| ||||| ||||||||||||| |||||||||||||||||| | |  ||| |||||||||||| |||||||||||    
T  44714807 ggaaaatgttatttttctagaaaaatagtatcaagaatttttcaagatatagttggcaagttttaattgtatgatttattt 44714887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 29095530 - 29095606
Alignment:
Q  198 tatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||||||||||| || ||||||||||| |  ||  |||||||||||||||||| | ||||||||    
T  29095530 tatttctctagaaaaatagcatcaaaaaattttcaagacatagttgccaagttttaattgcatgatatctttgttca 29095606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 34808134 - 34808051
Alignment:
Q  191 aaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||| ||||||| |||||||||||||| |    |||||||||| |||||| | |||||||||||||||||||||||| ||||    
T  34808134 aaaatgttatttctttagaaaaatagcataatttttttttcaagagacaactagcaagttttaattgcatgatttatttattca 34808051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 2958710 - 2958775
Alignment:
Q  204 tctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||| ||||||||||||||||||||||| |||| |     |||||||||||||||||||||||    
T  2958710 tctagaaaaataacatcaagaatttttcaagacacagctggca-----taattgcatgatttatttgttca 2958775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 1270175 - 1270217
Alignment:
Q  193 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  1270175 aatgctatatctctagaaaaataacatcaagaattcttcaaga 1270217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 4194770 - 4194812
Alignment:
Q  193 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  4194770 aatgctatatctctagaaaaataacatcaagaattcttcaaga 4194812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 20808951 - 20808993
Alignment:
Q  193 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  20808951 aatgctatatctctagaaaaataacatcaagaattcttcaaga 20808993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 34475903 - 34475945
Alignment:
Q  193 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  34475903 aatgctatatctctagaaaaataacatcaagaattcttcaaga 34475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 23991946 - 23992034
Alignment:
Q  186 ttaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||  |||||||||||||||||| | ||||||||    
T  23991946 ttaggaaaatgctatttctctagaaacatagtatcaagaatttttcaagacacaactgacaagttttaattgcatgatatttttgttca 23992034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 42195578 - 42195492
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||   |||||||||||||||||||||||||||||    
T  42195578 aggaaaatgttatttctctagaaaaataacatcaagaattttttaagatacaactaaaaagttttaattgcatgatttatttgttca 42195492  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 8307724 - 8307637
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaa-tttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||| |||||||| |||||||||||||| | || ||||||||||||||||||| || |||||| |||||||||||||||||||    
T  8307724 aggaaaatgatatttctcaagaaaaatagcatcgacaaatttttcaagacacaactggcaaattttaactgcatgatttatttgttca 8307637  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 27425773 - 27425837
Alignment:
Q  210 aaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  27425773 aaaatagcatcaacaatttttcaagacacagttggcaagttttaattgcatgatttatttgttca 27425837  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 274
Target Start/End: Complemental strand, 22327002 - 22326973
Alignment:
Q  245 taagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||||||||||||||||    
T  22327002 taagttttaattgcatgatttatttgttca 22326973  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 17612005 - 17611957
Alignment:
Q  226 tttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||| ||||||||||||  |||||||||||| ||||||||||| ||||    
T  17612005 ttttttaagacacaactgacaagttttaattgtatgatttatttattca 17611957  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 23642977 - 23643063
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  || |||||||| ||| |||||||||||||    
T  23642977 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagctgacaaattttaattccataatttatttgttca 23643063  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 39145452 - 39145365
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttcat 275  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||  |||||||||||| ||||||| |||||||||    
T  39145452 aggaaaatgctatttctctagaaaaatagcatcaagaatttgtcaagacacagttgtcaagttttaattgtatgatttctttgttcat 39145365  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 275
Target Start/End: Complemental strand, 52546942 - 52546856
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttcat 275  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||   ||||||||||||||| ||||||||||||||    
T  52546942 ggaaaatgctatttctctagaaaaattgcatcaagaattttccaagacacaccttacaagttttaattgcataatttatttgttcat 52546856  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 45166424 - 45166344
Alignment:
Q  191 aaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgt 271  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||  ||| || |||||||||||||||||||||||    
T  45166424 aaaatgttatttctctagaaaaatagcatcaagaatttttcaagacgcagttggcaaattttaattgcatgatttatttgt 45166344  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 38176390 - 38176473
Alignment:
Q  191 aaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||  ||| |||||||||||||||| ||||||||||||    
T  38176390 aaaatgatatttctttagaaaaatagcattaagaatttttcaagacacagttggcaagttttaattgcatgttttatttgttca 38176473  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 36517715 - 36517629
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||| |||||| ||||| | ||||||||||||||| |||||  ||| |||||||||||||||||||||||||||||    
T  36517715 aggaaaatgctatttatctagataaataacttcaagaatttttcaaaacacagttggcaagttttaattgcatgatttatttgttca 36517629  T

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Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 50612872 - 50612958
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||| ||||| |||  ||||||||||||||| |||||||||||||    
T  50612872 aggaaaatgttatttctctataaaaacagcatcaagaatttttcaatacacagctgacaagttttaattgcataatttatttgttca 50612958  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 521763 - 521848
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||| |||||| ||||| |||||||||||||| ||||||||  ||  |||||||||||||||||||||||||||||    
T  521763 ggaaaatgctatttatctagacaaatatcatcaagaattttttaagacacagttgtcaagttttaattgcatgatttatttgttca 521848  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 20912350 - 20912282
Alignment:
Q  206 tagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||    
T  20912350 tagaaaaatagcatcaagaatttttaaagacatagctgataagttttaattgcatgatttatttgttca 20912282  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 31788506 - 31788420
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    ||||||||| |||||||||| ||||||| | |||||||||||||||||||||| ||  ||||||||| |||| ||||||||||||||    
T  31788506 aggaaaatgttatttctctataaaaataacttcaagaatttttcaagacacaattgacaagttttaactgcaagatttatttgttca 31788420  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 51297021 - 51297109
Alignment:
Q  188 aggaaaatgctatttctctagaaaaa-tagcatcaagaatttttcaagacacaactgg-taagttttaattgcatgatttatttgttca 274  Q
    ||||||||| |||||||||| ||||| ||||||||| | ||||||||||| ||| | | ||| ||||||||||||||||||||||||||    
T  51297021 aggaaaatgttatttctctaaaaaaaatagcatcaaaattttttcaagacgcaagttgataaattttaattgcatgatttatttgttca 51297109  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 34624486 - 34624532
Alignment:
Q  189 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  34624486 ggaaaatgttatttctctagaaaaatagcatcaagaattttttaaga 34624532  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 1561283 - 1561339
Alignment:
Q  218 atcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||  ||||||| |||  |||||| ||||||||||||||||||||||    
T  1561283 atcaagaattttttcagacacagctgacaagtttcaattgcatgatttatttgttca 1561339  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 50613069 - 50613027
Alignment:
Q  193 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 235  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  50613069 aatgctatatctctagaaaaataacatcaagaattcttcaaga 50613027  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 615348 - 615384
Alignment:
Q  18 attacatgatttagtagaggatatggggaaataaatt 54  Q
    |||||||||||| |||||||||||||||||| |||||    
T  615348 attacatgatttggtagaggatatggggaaagaaatt 615384  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 615447 - 615518
Alignment:
Q  51 aattcaagttttagaagaaaatccactgagtaa--taacgatatggatggtttggcttttcatcttgaactt 120  Q
    ||||||||||||| |||||||| |  ||||||   ||| ||||||||| ||||||||||||||||| |||||    
T  615447 aattcaagttttacaagaaaatactgtgagtatattaatgatatggatagtttggcttttcatctttaactt 615518  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 22650451 - 22650479
Alignment:
Q  246 aagttttaattgcatgatttatttgttca 274  Q
    |||||||||||||||||||||||||||||    
T  22650451 aagttttaattgcatgatttatttgttca 22650479  T

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Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 492865 - 492780
Alignment:
Q  190 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaattgcatgatttatttgttcat 275  Q
    ||||||| |||||||||| |||||||||||||| | ||||||||||||| || |  ||||||||||||||| ||||||||||||||    
T  492865 gaaaatgttatttctctaaaaaaatagcatcaaaattttttcaagacacgacagtcaagttttaattgcataatttatttgttcat 492780  T

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Target: scaffold0339 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 13443 - 13378
Alignment:
Q  188 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggtaagttttaa 254  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||  |||||||||||||    
T  13443 aggaaaatgatatttctctagaaaaatagcatcaagaa-ttttcaagacacagatggtaagttttaa 13378  T

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Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 238395 - 238325
Alignment:
Q  51 aattcaagttttagaagaaaatccactgagtaataacgatatggatggtttggcttttcatcttgaacttt 121  Q
    |||||||||||||||||||||| |  ||||||||||||| |||||  ||||| ||||||||||| ||||||    
T  238395 aattcaagttttagaagaaaatacggtgagtaataacgacatggagagtttgacttttcatctttaacttt 238325  T

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