View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21425_low_4 (Length: 289)
Name: NF21425_low_4
Description: NF21425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21425_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 33750715 - 33750436
Alignment:
| Q |
1 |
tctcactttgaatttcttgattcatattctcgttctcattctcat------cttttacattctctaaatcaggagcaaccacttctgactgcttaagtga |
94 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750715 |
tctcactttgcatttcttgattcatattctcgttctcattctcattctcatcttttacattctctaaatcaggagcaaccacttctgactgcttaagtga |
33750616 |
T |
|
| Q |
95 |
atcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgtt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750615 |
atcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgtt |
33750516 |
T |
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| Q |
195 |
ccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750515 |
ccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
33750436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 84 - 275
Target Start/End: Complemental strand, 33719153 - 33718962
Alignment:
| Q |
84 |
tgcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccg |
183 |
Q |
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| T |
33719153 |
tgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagctctggcagcttcctccgccg |
33719054 |
T |
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| Q |
184 |
tggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctcta |
275 |
Q |
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| T |
33719053 |
tggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgtctcactcctcta |
33718962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 86 - 274
Target Start/End: Complemental strand, 33735824 - 33735636
Alignment:
| Q |
86 |
cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtg |
185 |
Q |
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|||||| || |||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
33735824 |
cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg |
33735725 |
T |
|
| Q |
186 |
gaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
274 |
Q |
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| T |
33735724 |
gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct |
33735636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 85 - 274
Target Start/End: Complemental strand, 33721171 - 33720982
Alignment:
| Q |
85 |
gcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgt |
184 |
Q |
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| T |
33721171 |
gcttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgt |
33721072 |
T |
|
| Q |
185 |
ggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
274 |
Q |
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| T |
33721071 |
ggtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcctct |
33720982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 6583102 - 6583049
Alignment:
| Q |
222 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctcta |
275 |
Q |
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|||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
6583102 |
gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctcta |
6583049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 6568943 - 6568890
Alignment:
| Q |
222 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctcta |
275 |
Q |
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| T |
6568943 |
gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctcta |
6568890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 13409921 - 13409878
Alignment:
| Q |
231 |
atttcagcagcccatttaccccatggtctttgtctcactcctct |
274 |
Q |
| |
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||||| || |||||||| |||||||||||||||||||||||||| |
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| T |
13409921 |
atttctgctgcccattttccccatggtctttgtctcactcctct |
13409878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 38337601 - 38337553
Alignment:
| Q |
227 |
acgaatttcagcagcccatttaccccatggtctttgtctcactcctcta |
275 |
Q |
| |
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||||||||||||| ||||||| ||||| |||||||||| ||||||||| |
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| T |
38337601 |
acgaatttcagcaacccattttccccaatgtctttgtctaactcctcta |
38337553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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