View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21426_high_3 (Length: 339)
Name: NF21426_high_3
Description: NF21426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21426_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 6191482 - 6191181
Alignment:
| Q |
14 |
aagcaaaggaaatgaaggaagaccaactgaatctgaagctggattgcatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagt |
113 |
Q |
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| T |
6191482 |
aagcaaaggaaatgaaggaagaccaactgaatctgaagctggattgtatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagt |
6191383 |
T |
|
| Q |
114 |
gaaaacaactatgatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactg |
213 |
Q |
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| T |
6191382 |
gaaaacaactatgatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatataca---aggacaggttattgttcccgacaccactg |
6191286 |
T |
|
| Q |
214 |
atccaataagtaaagaaaattcaccaatggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6191285 |
atccaataagtaaagaaaattcaccaatggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaag |
6191186 |
T |
|
| Q |
314 |
tccag |
318 |
Q |
| |
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||||| |
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| T |
6191185 |
tccag |
6191181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 318
Target Start/End: Complemental strand, 6184482 - 6184170
Alignment:
| Q |
21 |
ggaaatgaaggaagaccaactgaatctgaagctggattgcatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagtgaaaaca |
120 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||| | | | ||||| | ||||| || | |||||||||||||||||||| ||||| |
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| T |
6184482 |
ggaaatgaaggaagaccaattgaatctgaagctgcattgcatttatctccagtgtcaactgttgaa---aaaagttctgataacaagtcaagtgtaaaca |
6184386 |
T |
|
| Q |
121 |
actatgatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactgatccaat |
220 |
Q |
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|||| ||| || |||||||| ||||||||||||| | |||||| ||||||||| |||||||||| ||| | |||||||| || |||| ||||| || |
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| T |
6184385 |
actacgataggccagacaattgtgatgagaccaagaatccagaagaaaaaccaaacatacaaggagaacaaatcattgttcctgaaaccaatgatctgat |
6184286 |
T |
|
| Q |
221 |
aagt---------------aaagaaaattcaccaat---ggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatc |
302 |
Q |
| |
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|||| ||||||||| ||||||| ||||| || || |||||||| ||||||||| |||||||||||||||||||| |||||| |
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| T |
6184285 |
aagtgaaccagagcaagaaaaagaaaatgcaccaataacagatcttagcaaacatgaagatggatcagatgatgacccttttgctgaacttgatagcatc |
6184186 |
T |
|
| Q |
303 |
ctgctgggaagtccag |
318 |
Q |
| |
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||| |||||||||||| |
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| T |
6184185 |
ctgttgggaagtccag |
6184170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 37454117 - 37454424
Alignment:
| Q |
14 |
aagcaaaggaaatgaaggaagaccaactgaatctgaagctggattgcatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagt |
113 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | |||| || | ||||||||||||| |||| |
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|
| T |
37454117 |
aagcaaaggaattgaaggaagaccaacagaatctgaagctggattgcatcttccggtaatgtcagcggtcgaagaaaatgcatctgataacaagttaagt |
37454216 |
T |
|
| Q |
114 |
gaaaacaactatgatgggaaagacaattttgat---gagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacacca |
210 |
Q |
| |
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|||||||| |||||| || |||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||| |
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| T |
37454217 |
gaaaacaattatgattggcaagacaatattgatgatgagaccaagcaatcaaaaggaaaagcaaatatacaaggaggacaagttattgttcctgacacca |
37454316 |
T |
|
| Q |
211 |
ctgatccaataagtaaagaaaattcaccaatggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctggg |
310 |
Q |
| |
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|| | ||||||| |||||||| |||| ||||||| || || | ||||||| ||| || |||||| |||| ||||| ||||||| |||||| ||| |
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| T |
37454317 |
atggttcaataagcaaagaaaaggcaccggtggatcttagcaaatccgaagatggatctgacgaggacattttttctgaagttgagaggatcctgaaggg |
37454416 |
T |
|
| Q |
311 |
aagtccag |
318 |
Q |
| |
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|||||||| |
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|
| T |
37454417 |
aagtccag |
37454424 |
T |
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