View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21426_low_1 (Length: 560)
Name: NF21426_low_1
Description: NF21426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21426_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Complemental strand, 43016280 - 43015792
Alignment:
| Q |
19 |
acatgagcctcctgatgcttgcatttctcttgttgtagaaccttctcctattccaacctacaatatatataatggttgtatcaatcatcatcaaaactat |
118 |
Q |
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| T |
43016280 |
acatgagcctcctgatgcttgcatttctcttgttgtagaaccttctcctattccaacctacaatatatataatggttgtatcaatcatcatcaaaactat |
43016181 |
T |
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| Q |
119 |
atttatctatttataatgttacattttcttttcttagctaggtgggtaaaccaacgttggttagctagctactgacactgatttatcatccggtcaggtc |
218 |
Q |
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| T |
43016180 |
atttatttatttataatgttacattttcttttcttagctaggtgggtaaaccaacgttggttagctagctactgacactgatttatcatccggtcaggtc |
43016081 |
T |
|
| Q |
219 |
catacaaatttaatttttcggtgtatgcaagcaatgtttattaatcatgtcaacactcgatctacacattccttaacccttaatttcatgcatgttcttt |
318 |
Q |
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| T |
43016080 |
catacaaatttaattttgcggtgtatgcaagcaatgtttattaatcatgtcaacactcgatatacacattccttaacccttaatttcatgcatgttcttt |
43015981 |
T |
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| Q |
319 |
catctttttgtgcaaaagcgtatacttaccaaccgaacgttgaaatttcatataattataaagttaataatgtatagctgctagtgaaacatcacgttca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015980 |
catctttttgtgcaaaagcgtatacttaccaaccgaacgttgaaatttcatataattataaagttaataatgtatagctgctagtgaaacatcacgttca |
43015881 |
T |
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| Q |
419 |
tttctttagaaattaacgtgcctatatatccatgttccaatcaaatgctatgctttattgaaatttaaattaccaataaaaattagagg |
507 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015880 |
tttctttagaaattaacgtgcctatacatccatgttccaatcaaatgctatgctttattgaaatttaaattaccaataaaaattagagg |
43015792 |
T |
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