View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21426_low_6 (Length: 217)

Name: NF21426_low_6
Description: NF21426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21426_low_6
NF21426_low_6
[»] chr8 (3 HSPs)
chr8 (1-35)||(186977-187011)
chr8 (1-35)||(308604-308638)
chr8 (1-35)||(25276923-25276957)
[»] chr7 (4 HSPs)
chr7 (1-35)||(15578053-15578087)
chr7 (1-35)||(28750708-28750742)
chr7 (1-35)||(38916174-38916208)
chr7 (1-35)||(27230768-27230802)
[»] chr6 (3 HSPs)
chr6 (1-35)||(605275-605309)
chr6 (1-35)||(12307100-12307134)
chr6 (1-31)||(8701197-8701227)
[»] chr5 (3 HSPs)
chr5 (1-35)||(14394274-14394308)
chr5 (4-35)||(20983772-20983803)
chr5 (5-35)||(25672560-25672590)
[»] chr4 (2 HSPs)
chr4 (1-35)||(23643711-23643745)
chr4 (4-35)||(43013060-43013091)
[»] chr3 (3 HSPs)
chr3 (1-35)||(785551-785585)
chr3 (1-35)||(30384837-30384871)
chr3 (1-35)||(53153626-53153660)
[»] chr2 (3 HSPs)
chr2 (1-35)||(9074899-9074933)
chr2 (1-35)||(9914507-9914541)
chr2 (1-35)||(30674220-30674254)
[»] chr1 (1 HSPs)
chr1 (1-35)||(40889075-40889109)


Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 187011 - 186977
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  187011 cactaacatcatcaattatgttatttatcatctac 186977  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 308638 - 308604
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  308638 cactaacatcatcaattatgttatttatcatctac 308604  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25276923 - 25276957
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  25276923 cactaacatcatcaattatgttatttatcatctac 25276957  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15578087 - 15578053
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  15578087 cactaacatcatcaattatgttatttatcatctac 15578053  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28750708 - 28750742
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28750708 cactaacatcatcaattatgttatttatcatctac 28750742  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38916174 - 38916208
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38916174 cactaacatcatcaattatgttatttatcatctac 38916208  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27230802 - 27230768
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  27230802 cactaacatcaacaattatgttatttatcatctac 27230768  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 605309 - 605275
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  605309 cactaacatcatcaattatgttatttatcatctac 605275  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12307100 - 12307134
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  12307100 cactaacatcatcaattatgttatttatcatctac 12307134  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 8701227 - 8701197
Alignment:
Q  1 cactaacatcatcaattatgttatttatcat 31  Q
    |||||||||||||||||||||||||||||||    
T  8701227 cactaacatcatcaattatgttatttatcat 8701197  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14394308 - 14394274
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14394308 cactaacatcatcaattatgttatttatcatctac 14394274  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 35
Target Start/End: Complemental strand, 20983803 - 20983772
Alignment:
Q  4 taacatcatcaattatgttatttatcatctac 35  Q
    ||||||||||||||||||||||||||||||||    
T  20983803 taacatcatcaattatgttatttatcatctac 20983772  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 25672590 - 25672560
Alignment:
Q  5 aacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||    
T  25672590 aacatcatcaattatgttatttatcatctac 25672560  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 23643745 - 23643711
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  23643745 cactaacatcatcaattatgttatttatcatctac 23643711  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 35
Target Start/End: Complemental strand, 43013091 - 43013060
Alignment:
Q  4 taacatcatcaattatgttatttatcatctac 35  Q
    ||||||||||||||||||||||||||||||||    
T  43013091 taacatcatcaattatgttatttatcatctac 43013060  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 785551 - 785585
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  785551 cactaacatcatcaattatgttatttatcatctac 785585  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30384837 - 30384871
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  30384837 cactaacatcattaattatgttatttatcatctac 30384871  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 53153626 - 53153660
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  53153626 cactaacatcatcaatgatgttatttatcatctac 53153660  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9074933 - 9074899
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  9074933 cactaacatcatcaattatgttatttatcatctac 9074899  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9914541 - 9914507
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  9914541 cactaacatcatcaattatgttatttatcatctac 9914507  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30674220 - 30674254
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30674220 cactaacatcatcaattatgttatttatcatctac 30674254  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40889109 - 40889075
Alignment:
Q  1 cactaacatcatcaattatgttatttatcatctac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  40889109 cactaacatcatcaattatgttatttatcatctac 40889075  T

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