View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21427_high_2 (Length: 367)
Name: NF21427_high_2
Description: NF21427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21427_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 17798572 - 17798374
Alignment:
| Q |
19 |
tatgtatacattcttgtaatcttattataggcatctcttatgcctttccatttgttaaattggtatgacttaaaaatgtcttttacctatttgcatttgt |
118 |
Q |
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| T |
17798572 |
tatgtatacattcttgtaatcttattataggcatctcttatgcctttccatttgttaaattggtatgacttaaaaatgtcttttacctatttgcatttgt |
17798473 |
T |
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| Q |
119 |
gtacaaggacgaatgttttttacctagtagggccaaatgaaaaatattcacatatttgtgattttgtgttcaaatcatgcttacagagcctctctccaa |
217 |
Q |
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| T |
17798472 |
gtacaaggacgaatgttttttacctagtagggacaaatgaacaatattcacatatttgtgattttgtgttcaaatcatgcttacagagcctctctccaa |
17798374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 242 - 361
Target Start/End: Complemental strand, 17798212 - 17798093
Alignment:
| Q |
242 |
ttattcagaattttcaagtaaatgaccaaatcgtaaaccaacttcaatcaatataattgtgtatttaagatgacaaaacaagagcacttcacttaaatcc |
341 |
Q |
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| T |
17798212 |
ttattcagaattttcaagtaaatgaccaagtcgtagaccaacttcaatcaatataattgtgtatttaagatgacaaaacaagagcactttacttaaatcc |
17798113 |
T |
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| Q |
342 |
atcgttttcttttcatctca |
361 |
Q |
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| T |
17798112 |
atcgttttcttttcttctca |
17798093 |
T |
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