View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21427_low_3 (Length: 363)
Name: NF21427_low_3
Description: NF21427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21427_low_3 |
 | |
|
| [»] scaffold0287 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0287 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 14932 - 14587
Alignment:
| Q |
1 |
aatagtgtttggaacataccataaggacggatttgatgtgatcattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14932 |
aatagtgtttggaacataccataaggacggatttgatgtgatcattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaac |
14833 |
T |
|
| Q |
101 |
tatatccttctcttcttcatctttcttccgattattaggattgagatgttcttgaaggacttgttcaagaaactcatccaaagccttgaaagtcttgtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14832 |
tatatccttctcttcttcatctttcttccgattattaggattgagatgttcttgaaggacttgttcaagaaactcatccaaagccttgaaagtcttgtca |
14733 |
T |
|
| Q |
201 |
acacgagcatttgccccagtgagtttatcaatccaccccataaaaggaatatgatctgaaacaaagaaggaaaggaaaatagcttctgtctcatgaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14732 |
acacgagcatttgccccagtgagtttatcaatccaccccataaaaggaatatgatctgaaacaaagaaggaaaggaaaatagcttctgtctcatgaagta |
14633 |
T |
|
| Q |
301 |
aattatggaacctgcttttctcacccccttcatgctcataactttt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14632 |
aattatggaacctgcttttctcacccccttcatgctcataactttt |
14587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 3631153 - 3631498
Alignment:
| Q |
1 |
aatagtgtttggaacataccataaggacggatttgatgtgatcattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631153 |
aatagtgtttggaacataccataaggacggatttgatgtgatcattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaac |
3631252 |
T |
|
| Q |
101 |
tatatccttctcttcttcatctttcttccgattattaggattgagatgttcttgaaggacttgttcaagaaactcatccaaagccttgaaagtcttgtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631253 |
tatatccttctcttcttcatctttcttccgattattaggattgagatgttcttgaaggacttgttcaagaaactcatccaaagccttgaaagtcttgtca |
3631352 |
T |
|
| Q |
201 |
acacgagcatttgccccagtgagtttatcaatccaccccataaaaggaatatgatctgaaacaaagaaggaaaggaaaatagcttctgtctcatgaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631353 |
acacgagcatttgccccagtgagtttatcaatccaccccataaaaggaatatgatctgaaacaaagaaggaaaggaaaatagcttctgtctcatgaagta |
3631452 |
T |
|
| Q |
301 |
aattatggaacctgcttttctcacccccttcatgctcataactttt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631453 |
aattatggaacctgcttttctcacccccttcatgctcataactttt |
3631498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 3620767 - 3621101
Alignment:
| Q |
12 |
gaacataccataaggacggatttgatgtgatcattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaactatatccttct |
111 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3620767 |
gaacataccataacgacggctttgatgtgattattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaactatatccttct |
3620866 |
T |
|
| Q |
112 |
cttcttcatctttcttccgattattaggattgagatgttcttgaaggacttgttcaagaaactcatccaaagccttgaaagtcttgtcaacacgagcatt |
211 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
3620867 |
cttcatcatcttttttcctattattaggattgagatgttccttgaggacttgttcaaagaactcatccaaagccttgaaagtgttgtcaacacgagcaat |
3620966 |
T |
|
| Q |
212 |
tgccccagtgagtttatcaatccaccccataaaaggaatatgatctgaaacaaagaaggaaaggaaaatagcttctgtctcatgaagtaaattatggaac |
311 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |
|
|
| T |
3620967 |
tgcccctgtgagtttatcaacccaccccataaaaggaatataatctgaaacaaaaaaggaaaggaaaatagcttgtgtctcattaagtaaaccatggaac |
3621066 |
T |
|
| Q |
312 |
ctgcttttctcacccccttcatgctcataactttt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3621067 |
ctgcttttctcacccccttcatgctcataactttt |
3621101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 9401162 - 9401208
Alignment:
| Q |
222 |
agtttatcaatccaccccataaaaggaatatgatctgaaacaaagaa |
268 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||| ||||||||||| |
|
|
| T |
9401162 |
agtttatcaatccaacccataaatggaatataatcagaaacaaagaa |
9401208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University