View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21427_low_4 (Length: 250)

Name: NF21427_low_4
Description: NF21427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21427_low_4
NF21427_low_4
[»] chr7 (3 HSPs)
chr7 (20-94)||(6241726-6241800)
chr7 (20-68)||(6212702-6212750)
chr7 (20-68)||(6241629-6241677)
[»] chr1 (1 HSPs)
chr1 (157-239)||(8368659-8368741)


Alignment Details
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 6241726 - 6241800
Alignment:
Q  20 aaaaacaggtgataagataattataatgttaaagtcattcaattttatttgcaaaatggaaatattaaaccgata 94  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6241726 aaaaacaggtgataagataattataatgttaaagtcattcatttttatttgcaaaatggaaatattaaaccgata 6241800  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 6212702 - 6212750
Alignment:
Q  20 aaaaacaggtgataagataattataatgttaaagtcattcaattttatt 68  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6212702 aaaaacaggtgataagataattataatgttaaagtcattcatttttatt 6212750  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 6241629 - 6241677
Alignment:
Q  20 aaaaacaggtgataagataattataatgttaaagtcattcaattttatt 68  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6241629 aaaaacaggtgataagataattataatgttaaagtcattcatttttatt 6241677  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 8368659 - 8368741
Alignment:
Q  157 gggattgcttgagctactgccttgattaaagtttccttcccggcacgagaaagacatttttccttccatcccttgatattctt 239  Q
    ||||| || ||||| ||||| |||||||||||||| ||||| ||||| || |||||||| || ||||| || ||||| |||||    
T  8368659 gggatagcctgagcaactgctttgattaaagtttctttcccagcacgggagagacatttctctttccagcctttgatcttctt 8368741  T

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