View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21428_high_1 (Length: 557)

Name: NF21428_high_1
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21428_high_1
NF21428_high_1
[»] chr5 (6 HSPs)
chr5 (335-537)||(40811349-40811550)
chr5 (335-535)||(27756538-27756746)
chr5 (11-70)||(40811013-40811072)
chr5 (335-468)||(16309852-16309985)
chr5 (335-530)||(16308669-16308864)
chr5 (335-391)||(27755504-27755557)
[»] chr2 (10 HSPs)
chr2 (335-468)||(37394061-37394194)
chr2 (335-468)||(44464843-44464976)
chr2 (335-468)||(44421095-44421228)
chr2 (335-422)||(8803063-8803150)
chr2 (335-468)||(472893-473025)
chr2 (335-393)||(44420043-44420101)
chr2 (335-405)||(8802040-8802108)
chr2 (335-392)||(34591954-34592011)
chr2 (335-530)||(44463667-44463866)
chr2 (335-383)||(9109181-9109229)
[»] chr1 (5 HSPs)
chr1 (335-537)||(13209671-13209881)
chr1 (335-468)||(7185609-7185742)
chr1 (335-468)||(26646583-26646715)
chr1 (335-391)||(7184565-7184620)
chr1 (335-468)||(13210876-13210998)
[»] chr3 (2 HSPs)
chr3 (335-535)||(30700394-30700602)
chr3 (335-452)||(30701595-30701711)
[»] chr4 (2 HSPs)
chr4 (335-468)||(42889564-42889697)
chr4 (335-468)||(54536449-54536582)
[»] chr8 (3 HSPs)
chr8 (335-391)||(15279395-15279450)
chr8 (335-391)||(15459764-15459819)
chr8 (335-468)||(3157792-3157923)
[»] chr6 (2 HSPs)
chr6 (398-465)||(33469625-33469692)
chr6 (336-393)||(1444997-1445054)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 9e-93; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 335 - 537
Target Start/End: Original strand, 40811349 - 40811550
Alignment:
Q  335 tttttaatttgaaa-ttttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatc 433  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40811349 tttttaatttgaaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgtcactggatatc 40811448  T
Q  434 tggaacgacgcataagcctcacttgccatgtcacatgtcagttgccattagacaaatgagcgattttgtaacagaagatgacggcatggaccaaaagtaa 533  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||    
T  40811449 tggaacgacgcataagcctcacttgccatgtcacatgttagttgccattagacacatgagcgattttg--acagaagatgacggcatggaccaaaagtaa 40811546  T
Q  534 aacg 537  Q
    ||||    
T  40811547 aacg 40811550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 335 - 535
Target Start/End: Original strand, 27756538 - 27756746
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| |||||  | |||||||| || |||||||| |||  |||||| ||||    
T  27756538 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataaccttgccactggacatct 27756637  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca--------tgtcagttgccattagacaaatgagcgattttgtaacagaagatgacggcatggacca 526  Q
    |||| ||| |||||||||||||||||||||||||        |||||| |||| | ||||| || |||| |||||||||| | | |||||||| ||||||    
T  27756638 ggaatgacacataagcctcacttgccatgtcacacatcgccgtgtcagctgccgtcagacacataagcgtttttgtaacaaatgctgacggcagggacca 27756737  T
Q  527 aaagtaaaa 535  Q
    |||| ||||    
T  27756738 aaagcaaaa 27756746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 40811013 - 40811072
Alignment:
Q  11 agagatgaatgtatgatggtggtggtgtagggttgatgcatttgttgttgtttctgttag 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40811013 agagatgaatgtatgatggtggtggtgtagggttgatgcatttgttgttgtttctgttag 40811072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 16309852 - 16309985
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| |||||  | |||||||| || |||||||  |||  | | || ||||    
T  16309852 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataatcttgccatttgacatct 16309951  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca 468  Q
    |||| ||| |||||||||||||||||| ||||||    
T  16309952 ggaatgacacataagcctcacttgccacgtcaca 16309985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 530
Target Start/End: Complemental strand, 16308864 - 16308669
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||||    | |||||||||||   | |||| |||  | | || ||||    
T  16308864 tttttaatttaaaattttgtta-ttcttgttttttaatttcgtccctctgtaaatttgtgtttttggatttggtctatgtaaccttgccatttgacatct 16308766  T
Q  435 ggaacgacgcataagcctcacttgccatgtcac-atgtcagttgccattagacaaatgagcgattttgtaacagaagatgacggcatggaccaaaag 530  Q
    |||||||| |||||||||  ||||||| ||| | | ||||| || | ||||||| || |||| |||||||||||| |||||||| | ||||||||||    
T  16308765 ggaacgacacataagccttgcttgccacgtcgccacgtcagctgtcgttagacacataagcgtttttgtaacagatgatgacggtagggaccaaaag 16308669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 27755557 - 27755504
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattt 391  Q
    |||||||||| ||||||||||| |||||  ||||||||| |||||||||||||||||    
T  27755557 tttttaatttaaaattttgtta-ttcgt--ttttgaatttcgtccctctgtaaattt 27755504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 335 - 468
Target Start/End: Complemental strand, 37394194 - 37394061
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||| ||||||||||||| ||||| |||||||||||||| ||||||| ||||| ||| || |||||||||||||||||||| |||| | |||| ||||    
T  37394194 tttttagtttgaaattttgtaaattcatgtttttgaattgcatccctctctaaatcttccattttggatttggttcctataaccttgtcagtggacatct 37394095  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca 468  Q
    | ||||||  |||| |||||||||||| ||||||    
T  37394094 gaaacgacttataaacctcacttgccacgtcaca 37394061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 44464843 - 44464976
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| |||||  | |||||||| || |||||||| |||  |||||| ||||    
T  44464843 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataaccttgccactggacatct 44464942  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca 468  Q
    |||||||| |||||||||||||||||| ||||||    
T  44464943 ggaacgacacataagcctcacttgccacgtcaca 44464976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 44421095 - 44421228
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| |||||||||||| ||||||||||||| |  ||||||||||| ||||| | | |||||||||||  ||||||| |||  | |||| ||||    
T  44421095 tttttaatttaaaattttgttaagtcgtgtttttgaagttggtccctctgtatattttaagttttggatttggtctctataaccttgccattggacatct 44421194  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca 468  Q
     ||||||| ||||||||||| |||||||||||||    
T  44421195 agaacgacacataagcctcagttgccatgtcaca 44421228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 335 - 422
Target Start/End: Original strand, 8803063 - 8803150
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgt 422  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||  | |||||||| || |||||||| ||||    
T  8803063 tttttaatttgaaattttgttaattcatgtttttgaatttcgtccctctgtaaattttcgtttttggatttagtccctataaccttgt 8803150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 335 - 468
Target Start/End: Complemental strand, 473025 - 472893
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||||| |||   | || |||||||| ||||||||  | | | |||| ||||    
T  473025 tttttaatttgaaattttgttaattcatg-ttttgaatttcgtccctctgtaaacttttgttttttgatttggtccctataaccatatcattggacatct 472927  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca 468  Q
    |||||||| ||||||||||||||||  |||||||    
T  472926 ggaacgacacataagcctcacttgcagtgtcaca 472893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 44420101 - 44420043
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttc 393  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||||||||||||||    
T  44420101 tttttaatttaaaattttgttaagtcatgtttttgaatttcgtccctctgtaaattttc 44420043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 8802108 - 8802040
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggattt 405  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| | ||||||||    
T  8802108 tttttaatttgaaattt-gttaattcgtgtttttgaatttcgtccc-ctggaaattttcatttttggattt 8802040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 34592011 - 34591954
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaatttt 392  Q
    |||||||||||||||||| |||| |||||||||||||||  |||||||| ||||||||    
T  34592011 tttttaatttgaaattttcttaaatcgtgtttttgaattttgtccctctataaatttt 34591954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 530
Target Start/End: Complemental strand, 44463866 - 44463667
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| ||||||||||| |||   |||||||||| ||||||||||||||||| |  | |||||||||||  || |||| |||  | | || ||||    
T  44463866 tttttaatttaaaattttgtta-ttc---tttttgaatttcgtccctctgtaaatttgcgtttttggatttggtcactgtaaccttgccatttgacatct 44463771  T
Q  435 ggaacgacgcataagcctcacttgccatgtca--------catgtcagttgccattagacaaatgagcgattttgtaacagaagatgacggcatggacca 526  Q
    |||||||||||||||| |  ||||||| ||||        |||||||| |||| ||||||| || |||| |||||||||||| ||| |||  | ||||||    
T  44463770 ggaacgacgcataagctttgcttgccacgtcacacgttgccatgtcagctgccgttagacacataagcgtttttgtaacagatgataacgatagggacca 44463671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 9109229 - 9109181
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctct 383  Q
    |||||||||||||||||||||||| | |||||||||||| | |||||||    
T  9109229 tttttaatttgaaattttgttaatccttgtttttgaatttcttccctct 9109181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 335 - 537
Target Start/End: Complemental strand, 13209881 - 13209671
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| |||||||||| | |||||||||||||||  |||||||| || ||||||  | ||||||||||| |||||||| |||  | |||| ||||    
T  13209881 tttttaatttaaaattttgtttagtcgtgtttttgaatttggtccctctatatattttcggttttggatttggtccctataaccttgccattggacatct 13209782  T
Q  435 ggaacgacgcataagcctcacttgccatgtca--------catgtcagttgccattagacaaatgagcgattttgtaacagaagatgacggcatggacca 526  Q
     ||||||| ||||||||||| |||||||||||        || ||||| |||||||||||| || | |  |||||||||||| | |||||||| ||||||    
T  13209781 agaacgacacataagcctcagttgccatgtcacacgttgccacgtcagctgccattagacacataaacatttttgtaacagatggtgacggcagggacca 13209682  T
Q  527 aaagtaaaacg 537  Q
    |||| ||||||    
T  13209681 aaagcaaaacg 13209671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 7185609 - 7185742
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| |||||  | |||||||| || |||||||| |||  |||||| ||||    
T  7185609 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataaccttgccactggacatct 7185708  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca 468  Q
    |||| ||| |||||| ||||||||||| ||||||    
T  7185709 ggaatgacacataagtctcacttgccacgtcaca 7185742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 26646583 - 26646715
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||||||||||||||||||| || |||| ||||  ||||| || ||||||||   | || |||||||| | |||||| |||| |||    | ||    
T  26646583 tttttaatttgaaattttgttaattcatg-ttttcaattttgtcccgctataaatttttgtttttcgatttggtccatataaccttgtcactaatcacct 26646681  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca 468  Q
    | |||||| |||||||||||||||||||||||||    
T  26646682 gaaacgacacataagcctcacttgccatgtcaca 26646715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 7184620 - 7184565
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattt 391  Q
    |||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||    
T  7184620 tttttaatttaaaattttgtta-ttcctgtttttgaatttcgtccctctgtaaattt 7184565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 13210876 - 13210998
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| ||||||||| || |  ||||| ||||||  ||||||||||||||||||  | |||| |||||| ||||||||||          |||||    
T  13210876 tttttaatttaaaattttgtaaagta-tgtttctgaattttgtccctctgtaaattttcgtttttggttttggtccctataacat----------tatct 13210964  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca 468  Q
    |||||||  ||||||||||||||||||| |||||    
T  13210965 ggaacgatacataagcctcacttgccatatcaca 13210998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 335 - 535
Target Start/End: Complemental strand, 30700602 - 30700394
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| || ||||| ||| |||| |||||||||| | ||||||||||| |||||  | |||||||| || |||||||| |||  |||||| || |    
T  30700602 tttttaatttaaagttttgctaagtcgtttttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataaccttgccactggacattt 30700503  T
Q  435 ggaacgacgcataagcctcacttgccatgtca--------catgtcagttgccattagacaaatgagcgattttgtaacagaagatgacggcatggacca 526  Q
    |||| ||| |||||||||||||||||||||||        |||||||| |||| | ||||| || |||  |||||||||||| | |||||||| ||||||    
T  30700502 ggaatgacacataagcctcacttgccatgtcacacatcgtcatgtcagctgccgtcagacacataagcatttttgtaacagatgctgacggcagggacca 30700403  T
Q  527 aaagtaaaa 535  Q
    |||| ||||    
T  30700402 aaagcaaaa 30700394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 452
Target Start/End: Original strand, 30701595 - 30701711
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| ||||||||||| ||| |||||||||||| ||||||| ||||||||| |  | ||||||||||| ||| |||| |||  | | || ||||    
T  30701595 tttttaatttaaaattttgtta-ttcctgtttttgaatttcgtccctttgtaaatttgcgtttttggatttggtccctgtaactttgccatttgacatct 30701693  T
Q  435 ggaacgacgcataagcct 452  Q
    |||||||| |||||||||    
T  30701694 ggaacgacacataagcct 30701711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 42889564 - 42889697
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| |||||  | |||||||| || |||||||| |||  | |||| ||||    
T  42889564 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataaccttgccattggacatct 42889663  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca 468  Q
    |||| ||| |||||||||||||||| | ||||||    
T  42889664 ggaatgacacataagcctcacttgctacgtcaca 42889697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 54536449 - 54536582
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| |||||||||| | |||||||||||||||  ||||||||||| ||||||  | |||||||||||  ||||||| ||   | |||| ||||    
T  54536449 tttttaatttaaaattttgtttagtcgtgtttttgaatttggtccctctgtatattttcggttttggatttggtctctataaccttaccattggacatct 54536548  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca 468  Q
     ||||||| ||||||||||| || ||||||||||    
T  54536549 agaacgacacataagcctcagtttccatgtcaca 54536582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 15279395 - 15279450
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattt 391  Q
    |||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||    
T  15279395 tttttaatttaaaattttgtta-ttcctgtttttgaatttcgtccctctgtaaattt 15279450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 15459764 - 15459819
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattt 391  Q
    |||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||    
T  15459764 tttttaatttaaaattttgtta-ttcctgtttttgaatttcgtccctctgtaaattt 15459819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 3157792 - 3157923
Alignment:
Q  335 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 434  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| ||||   | ||||| || || |||||||| |||  | |||| ||||    
T  3157792 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagtttttgtttttgga-ttagtccctataaccttgcca-tggacatct 3157889  T
Q  435 ggaacgacgcataagcctcacttgccatgtcaca 468  Q
    ||||  || |||||||||||||||||| ||||||    
T  3157890 ggaataacacataagcctcacttgccacgtcaca 3157923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 33469625 - 33469692
Alignment:
Q  398 ttggatttggttcctataacattgttactggatatctggaacgacgcataagcctcacttgccatgtc 465  Q
    ||||||||||| |||||||| |||  ||| |||||||||||| || |||||| |||||||||||||||    
T  33469625 ttggatttggtccctataaccttgccactagatatctggaactacacataagtctcacttgccatgtc 33469692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 1444997 - 1445054
Alignment:
Q  336 ttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttc 393  Q
    ||||||||| ||||||||| | || ||| ||||||||| ||||||||||||| |||||    
T  1444997 ttttaatttcaaattttgtaacttagtgattttgaatttcgtccctctgtaatttttc 1445054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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