View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21428_high_11 (Length: 361)
Name: NF21428_high_11
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21428_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 41403805 - 41404148
Alignment:
| Q |
1 |
agctggaactcaggctccaaaaaagcttggatcaagtttagtgaaagatatttcttatgaaacgtcgaagccttcggcgagcgatcttggaatcgatagt |
100 |
Q |
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| T |
41403805 |
agctggaactcaggctccaaaaaagcttgggtcaagtttagtgaaagatatttcttatgaaacgtcaaagccttcggcgagcgatcttggaatcgatagt |
41403904 |
T |
|
| Q |
101 |
gtcacggctatgcaacaaaaaccaagcatttcttcaagaccttctgaaggactaagccacaaaggatggaatcaagtggttattcatcaattcaaagcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41403905 |
gtcacggctatgcaacaaaaaccaagcatttcttcaagaccttctgaaggactaagccacaaaggatggaatcaagtggttattcatcaattcaaagcta |
41404004 |
T |
|
| Q |
201 |
taaaacagaagataaaacatgcgcttgtggaattcaagaaaagtggtcaccaaacatctgttgaagttatccacaataatgagaaagagatctcacaaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41404005 |
taaaacagaagataaaacatgcgcttgtggaattcaagaaaagtggtcaccaagcatctgtcgaagttatccacaataatgagaaagagatctcacaaag |
41404104 |
T |
|
| Q |
301 |
cttagatgttggcgtgattcaagaatacagaaagagtaagagct |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41404105 |
cttagatgttggcgtgattcaagaatacagaaagagtaagagct |
41404148 |
T |
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