View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21428_high_19 (Length: 207)
Name: NF21428_high_19
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21428_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 13103082 - 13102912
Alignment:
| Q |
17 |
cacagagacattgagattgtatcctgttgttcctattgtatgtaccttctaccaatttcttcgaaaccatcttaagttattttttccttgcttgacagaa |
116 |
Q |
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| T |
13103082 |
cacagagacattgagattgtatcctgttgttcctattgtatgtaccttctaccaatttcttcgaaaccatcttaagttattttttccttgcttgacagaa |
13102983 |
T |
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| Q |
117 |
tttttatattagggtgcttacgatttgattctttcatgtcattgtaatctctgctagattttgttgacatt |
187 |
Q |
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| T |
13102982 |
tttttatattagggtgcttacgatttgattctttcatgtcattgtaatctctgctagattttgttgacatt |
13102912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 13114056 - 13113973
Alignment:
| Q |
17 |
cacagagacattgagattgtatcctgttgttcctattgtatgtaccttctaccaatttcttcgaaaccatcttaagttattttt |
100 |
Q |
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| T |
13114056 |
cacagagacattgagattgtaccctgtactccctgttgtatgtaccttctaccaatttcttcaaaaccatcttgaattattttt |
13113973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 13095622 - 13095582
Alignment:
| Q |
147 |
ctttcatgtcattgtaatctctgctagattttgttgacatt |
187 |
Q |
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| T |
13095622 |
ctttcatgtcattgtaatctctgctagattttgttgacatt |
13095582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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