View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21428_high_5 (Length: 430)
Name: NF21428_high_5
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21428_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 248 - 415
Target Start/End: Original strand, 11007084 - 11007253
Alignment:
| Q |
248 |
gagatccattgtatctaacagcgaacaatcaacaacta---atttcccttttattcatcatctttctttctctatatcatcttcgacatatcctttatac |
344 |
Q |
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| T |
11007084 |
gagattcattgtatctaacagcgaaccatcaacaactatttatttcccttttattcatcatctttctttctctatatcatcttcgacatatcctttatac |
11007183 |
T |
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| Q |
345 |
accttcatcatattnnnnnnnntgtatattcgagaaagtcaattcatctcccacctccactccttcatctc |
415 |
Q |
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| T |
11007184 |
accttcatcatatt-aaaaaaatgtatattcgagaaagtcaattcatctcccacctccactccttcatctc |
11007253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 11006852 - 11007020
Alignment:
| Q |
17 |
tttgcaattcaggaaataggcaaaaactagtttaaattggtcatttgatccccggctaattttagtttcattttggtccta-aaattctaaaacgttatt |
115 |
Q |
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| T |
11006852 |
tttgcaattcaggaaatagccaaaaactagtttaaattggtcatttgatccctggctagttttagtttcattttggtcccataaattctaaaaagttatt |
11006951 |
T |
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| Q |
116 |
taatatctaggttaaccttaaccacaaatgtatacgttggaccaacattttagatgatccaccatagac |
184 |
Q |
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| T |
11006952 |
tgatctctaggttaaccttaatcagaaatgtatacgttgaaccaacattttagataattcaccatagac |
11007020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 42877866 - 42877899
Alignment:
| Q |
256 |
ttgtatctaacagcgaacaatcaacaactaattt |
289 |
Q |
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| T |
42877866 |
ttgtatctaacagcgaaccatcaacaactaattt |
42877899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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