View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21428_high_6 (Length: 424)
Name: NF21428_high_6
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21428_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 180 - 408
Target Start/End: Complemental strand, 11006750 - 11006535
Alignment:
| Q |
180 |
catgtatttaatcatttttaatataaaagtaacatgttgggttggctttcacgcaatgtttactgcttttccctttgcaatatataaataatgttcgttg |
279 |
Q |
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| T |
11006750 |
catgtatttaatcatttttaatataaaagtaacatgttgggttggctttcacgcaatgtttactgcttttccctttgcaatatataaataatgttcgttg |
11006651 |
T |
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| Q |
280 |
acttaaagaattgagcatcacattcatgtaggaagagtactcaacaatgaacttttgaagagtaccagagaaggattaaatatcactgagccctctctta |
379 |
Q |
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| T |
11006650 |
acttaaagaatggaccatcacattcatgt-------------aacaatgaacttttgaagagtaccagagaaggattaaatatcactgagccctctctta |
11006564 |
T |
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| Q |
380 |
ctacctcatcaccaacgtagtaatacttt |
408 |
Q |
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| T |
11006563 |
ctatctcatcaccaacgtagtaatacttt |
11006535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 11006825 - 11006747
Alignment:
| Q |
70 |
ggctaattttgaagttattaaacacacacgatgtatttttctctttcatcgaattttctccacacaagagttagtcatg |
148 |
Q |
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| T |
11006825 |
ggctaattttgaagttattaaacacacacgatgtattgttctctttcattgaattttctccacaaaagagttagtcatg |
11006747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 11006852 - 11006914
Alignment:
| Q |
17 |
tttgcaattcaggaaataggcaaaaactagtttaaattggtcatttgatccccggctaatttt |
79 |
Q |
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| T |
11006852 |
tttgcaattcaggaaatagccaaaaactagtttaaattggtcatttgatccctggctagtttt |
11006914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 211 - 358
Target Start/End: Complemental strand, 11025270 - 11025139
Alignment:
| Q |
211 |
acatgttgggttggctttcacgcaatgtttactgcttttccctttgcaatatataaataatgttcgttgacttaaagaattgagcatcacatt-catgta |
309 |
Q |
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| T |
11025270 |
acatgttggtttggctttcacgcaaggtttactgctttt-ccattgcaatat----ataatgttctttgact------------catcgcattccatgta |
11025188 |
T |
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| Q |
310 |
ggaagagtactcaacaatgaacttttgaagagtaccagagaaggattaa |
358 |
Q |
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| T |
11025187 |
ggaagagtattgaacaatgaacttgtgaagagtaccaaagaaggattaa |
11025139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 11016185 - 11016133
Alignment:
| Q |
304 |
catgtaggaa-gagtactcaacaatgaacttttgaagagtaccagagaaggat |
355 |
Q |
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| T |
11016185 |
catgtaggaaagagtattcaacaatgaacttgtgaagagtaccaaagaaggat |
11016133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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