View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21428_low_1 (Length: 623)
Name: NF21428_low_1
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21428_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 11 - 607
Target Start/End: Original strand, 55374232 - 55374831
Alignment:
| Q |
11 |
cattaacaaagcttagaacaattggtagtaagaagcatgaaagtaagaggagtgaagttgaaatggccatgattaagtgattgtgttgaggttgaagtaa |
110 |
Q |
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| T |
55374232 |
cattaacaaagcttagaacaattggtagtaagaagcatgaaagtaagaggagtgaagttgaaatggccatgattaagtgattgtgttgaggttgaagtaa |
55374331 |
T |
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| Q |
111 |
ttacaaagggaacaatgtgctcatttaataggtgaggagaaggttgtgcatacattttaggagcttgacttaaacattttttgagtttagttaacattaa |
210 |
Q |
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| T |
55374332 |
ttacaaagggaacaatgtgctcatttaataggtgaggagaaggttgtgcatacattttaggagcttgacttaaacattttttgagtttagttaacattaa |
55374431 |
T |
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| Q |
211 |
acgtggttgcacgagcttggttagttgacttactatacaatttcttaaactttgatacaaaagttatacttccannnnnnnnnnn---aaagtgttgtgt |
307 |
Q |
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| T |
55374432 |
acgtggttgcacgagcttggttagttgacttactatacaatttcttaaactttgatacaaaagttatacttccattttatttttttttaaagtggtgtgt |
55374531 |
T |
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| Q |
308 |
tattagaataaaatgatgatgattcaatggacataggaagttaattagtgtttacaatagaaagctcctcagaaatctatatatttggacggcttttaag |
407 |
Q |
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| T |
55374532 |
tattagaataaaatgatgatgattcaatggacataggaagttaattagtgtttacaatagaaagctcctcagaaatctatatatttggacggcttttaag |
55374631 |
T |
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| Q |
408 |
taggacaagcacgtcttgtgaaattgtcatgcttggattcaatataataacttatatttaagtcaaaagctaagtaaaattagaatttagttctaaatat |
507 |
Q |
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| T |
55374632 |
taggacaagcacgtcttgtgaaattctcatgcttggattcaatataataacttatatttaagtcaaaagctaagtaaaattagaatttagttttaaatat |
55374731 |
T |
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| Q |
508 |
ttaacaaatttgtcaattatgctagaagttacaatggagcctagtttagattaactttaattcgtttatgaaaacttatcaacttacataagtatatatt |
607 |
Q |
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| T |
55374732 |
ttaactaatttgtcaattatgctagaagttacaatggagcctaatttagattaactttaattcgtttatgaaaacttatcaacttacataagtatatatt |
55374831 |
T |
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