View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21428_low_10 (Length: 393)
Name: NF21428_low_10
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21428_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 16575710 - 16576076
Alignment:
| Q |
19 |
actaaagtgattagaagttgactttattatnnnnnnnngtgcatttatcttaagtttgtgtatagttttaatttctatataaaaacatggctatattcta |
118 |
Q |
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| T |
16575710 |
actaaagtgattagaagttgactttattataaaaaaaagtgcatttatcttaagtttgtgtatagttttaatttctatataaaaacatggctatattcta |
16575809 |
T |
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| Q |
119 |
tgaatcggtaagaatttttgcaattttaatcagaggttaatgtttcacctaactcgagtgattagtcttgtagttgtacggaaaaaattcacaccaacaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16575810 |
tgaatcggtaagaatttttgcaattttaatcagaggttaatattccatctaactcgagtgattagtcttgtagttgtacg-aaaaaattcacaccaacaa |
16575908 |
T |
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| Q |
219 |
aattgaggaaataaaggttgcaatctttgtccccagaatatatcttgaaatttatcatgtaactgtattttatgcatggtcgtaaagattggcaaaagaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16575909 |
aattgaggaaataaaggttgcaatctttgtccccagaatatatcttgaaatttatcgtgtaactgtattttatgcatggtcgtaaagattggcaaaagaa |
16576008 |
T |
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| Q |
319 |
ttgtattgtcgtaaagaagcttacactttctctttcattttattaacaaatatttctctcctttgctt |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
16576009 |
ttgtattgtcgtaaagaagcttacactttctctttcattttatttataaatatttctctcctttgctt |
16576076 |
T |
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