View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21428_low_16 (Length: 286)
Name: NF21428_low_16
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21428_low_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 53036880 - 53037147
Alignment:
| Q |
19 |
tcgaagcagaatcgtcgttaaccttatccgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgccc |
118 |
Q |
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| T |
53036880 |
tcgaagcagaatcgtcgttaaccttatccgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgccc |
53036979 |
T |
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| Q |
119 |
aattgaagacattccattggttattgttcagctcacaaatttcaaatgtggtggtgctagcattagtttgttaatctcacacgcggttgctgatggacca |
218 |
Q |
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| T |
53036980 |
aattgaagacattccattggttattgttcagctcacaaatttcaaatgtggtggtgctagcattagtttgttaatctcacacgcggttgctgatggacca |
53037079 |
T |
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| Q |
219 |
agcgcattgcatttcacttctgagtgggcacgacttgcgcgtggtgagcctgtgagaacaatgccata |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53037080 |
agcgcattgcatttcacttctgagtgggcacgacttgcgcgtggcgagcctgtgagaacaatgccata |
53037147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 39996715 - 39996465
Alignment:
| Q |
19 |
tcgaagcagaatcgtcgttaaccttatccgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgccc |
118 |
Q |
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|||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| |||||||||| ||| |
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| T |
39996715 |
tcgaagcacaatcctcgttaacattatccgaactaggtgacttttcaccttcttcggaatattaccgttaccttatcccacacattgattacacactccc |
39996616 |
T |
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| Q |
119 |
aattgaagacattccattggttattgttcagctcacaaatttcaaatgtggtggtgctagcattagtttgttaatctcacacgcggttgctgatggacca |
218 |
Q |
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||| ||||| |||||| ||||||| |||| ||||||||||| || || |||| | ||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
39996615 |
aatggaagatattccactggttatctttcaactcacaaattttaattgcggtgtagttagtattagtttgttaatctcacacgcagttgctgatggacca |
39996516 |
T |
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| Q |
219 |
agcgcattgcatttcacttctgagtgggcacgacttgcgcgtggtgagcct |
269 |
Q |
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||||| |||||||||| || ||||||||| || |||| |||||||||||| |
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| T |
39996515 |
agcgcgttgcatttcatttttgagtgggctcggattgcacgtggtgagcct |
39996465 |
T |
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