View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21428_low_18 (Length: 248)

Name: NF21428_low_18
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21428_low_18
NF21428_low_18
[»] chr1 (7 HSPs)
chr1 (12-247)||(15568899-15569133)
chr1 (63-244)||(8059781-8059962)
chr1 (104-247)||(46797004-46797148)
chr1 (174-246)||(29223891-29223963)
chr1 (163-226)||(6849118-6849181)
chr1 (102-196)||(51602463-51602557)
chr1 (61-122)||(29224007-29224068)
[»] chr5 (2 HSPs)
chr5 (102-247)||(38063512-38063657)
chr5 (109-247)||(25968939-25969077)
[»] chr3 (5 HSPs)
chr3 (61-246)||(25662589-25662774)
chr3 (61-246)||(25668994-25669179)
chr3 (61-246)||(25675399-25675584)
chr3 (61-246)||(25682073-25682258)
chr3 (61-246)||(25690377-25690562)
[»] chr2 (3 HSPs)
chr2 (102-247)||(34354614-34354759)
chr2 (102-226)||(32599758-32599882)
chr2 (102-243)||(24467687-24467828)
[»] chr8 (1 HSPs)
chr8 (102-247)||(1362913-1363058)
[»] chr7 (1 HSPs)
chr7 (105-170)||(29350514-29350579)
[»] chr6 (1 HSPs)
chr6 (63-143)||(3704902-3704982)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 15569133 - 15568899
Alignment:
Q  12 aagaactacattgtcgcatgaataattataggcacgcaagttcaaaagttgtcataaaaaaggagacttgagacatcgttagaagaagtttccataacat 111  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |  ||||||||||||||||||    
T  15569133 aagaactacattgttgcatgaataattataggcacgcaagttcaaaagttgtcataaaaaaggagactt-aggcatcgctttaagaagtttccataacat 15569035  T
Q  112 gaatgttaaaataatatagagagaaactaaaagtagataaccaatcaacatttctattttcctctcgccatgtatgattgaaatgtacctaccagtataa 211  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15569034 gaatgttaaaataattcagagagaaattaaaagtagataaccaatcaacatttctattttcctctcgccatgtatgattgaaatgtacctacgagtataa 15568935  T
Q  212 ctttaaaaactcttgtatacggcgcatcaaggtggg 247  Q
     |||||||||| ||||||||||| | ||||||||||    
T  15568934 ttttaaaaacttttgtatacggcacgtcaaggtggg 15568899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 244
Target Start/End: Original strand, 8059781 - 8059962
Alignment:
Q  63 tcataaaaaaggagacttgagacatcgttagaagaagtttccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaacat 162  Q
    |||| |||||||||||| || || || |||| || ||| ||||| |||||||||| |||| ||| || ||| || |||||| |||  | ||||||| ||     
T  8059781 tcatcaaaaaggagactcgaaacctcattaggaggagtctccatgacatgaatgtgaaaagaatctaaagaaaagctaaaattagcaagccaatcagcac 8059880  T
Q  163 ttctattttcctctcgccatgtatgattgaaatgtacctaccagtataactttaaaaactcttgtatacggcgcatcaaggt 244  Q
    |||||||| |||| ||||| ||||| ||||| || |||| ||||| ||||||||||| |||||| ||||||| || ||||||    
T  8059881 ttctatttccctcgcgccaggtatggttgaattgcacctgccagtttaactttaaaagctcttgaatacggcacaccaaggt 8059962  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 247
Target Start/End: Complemental strand, 46797148 - 46797004
Alignment:
Q  104 cataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaac-atttctattttcctctcgccatgtatgattgaaatgtaccta 202  Q
    ||||||||||||||||||| | | || |||||| |||||| |||  | ||||||||| | |||||||| ||   ||||||||||| |||||||| |||||    
T  46797148 cataacatgaatgttaaaagagtctaaagagaagctaaaattagccagccaatcaaccacttctatttcccctccgccatgtatggttgaaatgcaccta 46797049  T
Q  203 ccagtataactttaaaaactcttgtatacggcgcatcaaggtggg 247  Q
    | |||  ||||||||||    |||||||||||||||||| |||||    
T  46797048 ctagttcaactttaaaaggatttgtatacggcgcatcaaagtggg 46797004  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 29223963 - 29223891
Alignment:
Q  174 tctcgccatgtatgattgaaatgtacctaccagtataactttaaaaactcttgtatacggcgcatcaaggtgg 246  Q
    ||||| |||||||||||||||||||||| ||| |  |||||||| | |||||||||||| ||||| |||||||    
T  29223963 tctcgtcatgtatgattgaaatgtacctgccaattcaactttaagagctcttgtatacgacgcattaaggtgg 29223891  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 6849181 - 6849118
Alignment:
Q  163 ttctattttcctctcgccatgtatgattgaaatgtacctaccagtataactttaaaaactcttg 226  Q
    |||||||  |||| ||| |||||||||||||||| |||| ||||| ||||||||||| ||||||    
T  6849181 ttctattcccctcccgctatgtatgattgaaatgcacctgccagtttaactttaaaagctcttg 6849118  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 51602463 - 51602557
Alignment:
Q  102 tccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaacatttctattttcctctcgccatgtatgattgaaatg 196  Q
    ||||||||||||| ||||||||| |  | |||||| |||||| |||  | ||||||| || || ||||| |||| ||||| ||||||||||||||    
T  51602463 tccataacatgaaagttaaaatagtccaaagagaagctaaaattagtcatccaatcagcacttttatttccctcccgccaggtatgattgaaatg 51602557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 29224068 - 29224007
Alignment:
Q  61 tgtcataaaaaaggagacttgagacatcgttagaagaagtttccataacatgaatgttaaaa 122  Q
    ||||||||||||||||||| ||||| ||  ||| || ||| |||||| ||||||||||||||    
T  29224068 tgtcataaaaaaggagactagagacctcactaggaggagtatccatagcatgaatgttaaaa 29224007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 38063657 - 38063512
Alignment:
Q  102 tccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaacatttctattttcctctcgccatgtatgattgaaatgtacct 201  Q
    ||||||||||||||||||||| | |  | |||||| |||||| |||  | |||||||||| |||||||| |||| ||||| |||||||||||||| ||||    
T  38063657 tccataacatgaatgttaaaagagtccaaagagaagctaaaattagccatccaatcaacacttctatttccctcccgccaggtatgattgaaatgcacct 38063558  T
Q  202 accagtataactttaaaaactcttgtatacggcgcatcaaggtggg 247  Q
     | |||  || |||||||  |||||||| ||||| |||||||||||    
T  38063557 gctagttcaattttaaaaggtcttgtatgcggcgaatcaaggtggg 38063512  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 247
Target Start/End: Original strand, 25968939 - 25969077
Alignment:
Q  109 catgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaacatttctattttcctctcgccatgtatgattgaaatgtacctaccagta 208  Q
    |||||||||||||| | |  | |||||| |||||| |||  | ||||||| || |||||||| |||| || || |||||||||||||| |||| |||||     
T  25968939 catgaatgttaaaagagtccaaagagaagctaaaattagccatccaatcagcacttctatttccctcccgtcaggtatgattgaaatgcacctgccagtt 25969038  T
Q  209 taactttaaaaactcttgtatacggcgcatcaaggtggg 247  Q
     ||||||||||  |||||||| ||||| ||||| |||||    
T  25969039 caactttaaaaggtcttgtatgcggcgtatcaaagtggg 25969077  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 25662774 - 25662589
Alignment:
Q  61 tgtcataaaaaaggagacttgagacatcgttagaagaagtttccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaac 160  Q
    |||||||||||||||| || ||||| ||  ||| ||  || ||||||||||||||||||||||| |||| ||| ||| ||| | ||| || ||||||| |    
T  25662774 tgtcataaaaaaggaggctagagacctcactaggaggtgtatccataacatgaatgttaaaatagtatatagaaaaattaagattaggtacccaatcagc 25662675  T
Q  161 atttctattttcctctcgccatgtatgattgaaatgtacctaccagtataactttaaaaactcttgtatacggcgcatcaaggtgg 246  Q
    | |  | ||| | ||||||||||||||||||||||| |||  ||| |  |||||||| | ||| ||||||||||||| ||||||||    
T  25662674 actcgtgtttccttctcgccatgtatgattgaaatgcaccagccaattcaactttaagagctcatgtatacggcgcaccaaggtgg 25662589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 25669179 - 25668994
Alignment:
Q  61 tgtcataaaaaaggagacttgagacatcgttagaagaagtttccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaac 160  Q
    |||||||||||||||| || ||||| ||  ||| ||  || ||||||||||||||||||||||| |||| ||| ||| ||| | ||| || ||||||| |    
T  25669179 tgtcataaaaaaggaggctagagacctcactaggaggtgtatccataacatgaatgttaaaatagtatatagaaaaattaagattaggtacccaatcagc 25669080  T
Q  161 atttctattttcctctcgccatgtatgattgaaatgtacctaccagtataactttaaaaactcttgtatacggcgcatcaaggtgg 246  Q
    | |  | ||| | ||||||||||||||||||||||| |||  ||| |  |||||||| | ||| ||||||||||||| ||||||||    
T  25669079 actcgtgtttccttctcgccatgtatgattgaaatgcaccagccaattcaactttaagagctcatgtatacggcgcaccaaggtgg 25668994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 25675584 - 25675399
Alignment:
Q  61 tgtcataaaaaaggagacttgagacatcgttagaagaagtttccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaac 160  Q
    |||||||||||||||| || ||||| ||  ||| ||  || ||||||||||||||||||||||| |||| ||| ||| ||| | ||| || ||||||| |    
T  25675584 tgtcataaaaaaggaggctagagacctcactaggaggtgtatccataacatgaatgttaaaatagtatatagaaaaattaagattaggtacccaatcagc 25675485  T
Q  161 atttctattttcctctcgccatgtatgattgaaatgtacctaccagtataactttaaaaactcttgtatacggcgcatcaaggtgg 246  Q
    | |  | ||| | ||||||||||||||||||||||| |||  ||| |  |||||||| | ||| ||||||||||||| ||||||||    
T  25675484 actcgtgtttccttctcgccatgtatgattgaaatgcaccagccaattcaactttaagagctcatgtatacggcgcaccaaggtgg 25675399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 25682258 - 25682073
Alignment:
Q  61 tgtcataaaaaaggagacttgagacatcgttagaagaagtttccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaac 160  Q
    |||||||||||||||| || ||||| ||  ||| ||  || ||||||||||||||||||||||| |||| ||| ||| ||| | ||| || ||||||| |    
T  25682258 tgtcataaaaaaggaggctagagacctcactaggaggtgtatccataacatgaatgttaaaatagtatatagaaaaattaagattaggtacccaatcagc 25682159  T
Q  161 atttctattttcctctcgccatgtatgattgaaatgtacctaccagtataactttaaaaactcttgtatacggcgcatcaaggtgg 246  Q
    | |  | ||| | ||||||||||||||||||||||| |||  ||| |  |||||||| | ||| ||||||||||||| ||||||||    
T  25682158 actcgtgtttccttctcgccatgtatgattgaaatgcaccagccaattcaactttaagagctcatgtatacggcgcaccaaggtgg 25682073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 25690562 - 25690377
Alignment:
Q  61 tgtcataaaaaaggagacttgagacatcgttagaagaagtttccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaac 160  Q
    |||||||||||||||| || ||||| ||  ||| ||  || ||||||||||||||||||||||| |||| ||| ||| ||| | ||| || ||||||| |    
T  25690562 tgtcataaaaaaggaggctagagacctcactaggaggtgtatccataacatgaatgttaaaatagtatatagaaaaattaagattaggtacccaatcagc 25690463  T
Q  161 atttctattttcctctcgccatgtatgattgaaatgtacctaccagtataactttaaaaactcttgtatacggcgcatcaaggtgg 246  Q
    | |  | ||| | ||||||||||||||||||||||| |||  ||| |  |||||||| | ||| ||||||||||||| ||||||||    
T  25690462 actcgtgtttccttctcgccatgtatgattgaaatgcaccagccaattcaactttaagagctcatgtatacggcgcaccaaggtgg 25690377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 247
Target Start/End: Original strand, 34354614 - 34354759
Alignment:
Q  102 tccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaacatttctattttcctctcgccatgtatgattgaaatgtacct 201  Q
    |||||||||||||||| |||| | |  | ||||||  ||||| |||  | ||||||| || |||||||| |||| |||||||||||||||||||| ||||    
T  34354614 tccataacatgaatgtgaaaagagtccaaagagaagttaaaattagccatccaatcagcacttctatttccctcccgccatgtatgattgaaatgcacct 34354713  T
Q  202 accagtataactttaaaaactcttgtatacggcgcatcaaggtggg 247  Q
     | |||  ||||||| ||  |||||||| ||||| |||||||||||    
T  34354714 gctagttcaactttagaaggtcttgtatgcggcgtatcaaggtggg 34354759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 32599758 - 32599882
Alignment:
Q  102 tccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaacatttctattttcctctcgccatgtatgattgaaatgtacct 201  Q
    |||||||||||||| | |||  |||  ||||| || |||||| ||| || |||||| ||| ||||||| || || ||||||||||||| |||||| ||||    
T  32599758 tccataacatgaatttgaaacgaattaagagaaaagctaaaattagctagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacct 32599857  T
Q  202 accagtataactttaaaaactcttg 226  Q
     ||| |  |||||||||| ||||||    
T  32599858 gccaattcaactttaaaagctcttg 32599882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 24467828 - 24467687
Alignment:
Q  102 tccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaacatttctattttcctctcgccatgtatgattgaaatgtacct 201  Q
    ||||| |||||||||| |||| ||| || ||||||  ||||| |||  | |||||||||| |||||||| |||| || ||  |||| ||||| || ||||    
T  24467828 tccattacatgaatgtcaaaagaatttaaagagaaggtaaaattaggaagccaatcaacacttctatttccctcccgtcaaatatggttgaattgcacct 24467729  T
Q  202 accagtataactttaaaaactcttgtatacggcgcatcaagg 243  Q
    || | | ||||||||||| || ||| ||||||| || |||||    
T  24467728 actaatttaactttaaaagctattgaatacggcacaccaagg 24467687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 1363058 - 1362913
Alignment:
Q  102 tccataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaacatttctattttcctctcgccatgtatgattgaaatgtacct 201  Q
    ||||| |||||||||| |||| ||| || | |||| |||||| |||  | ||||||| || |||||||| ||||  |||| ||||| ||||| || | ||    
T  1363058 tccatgacatgaatgtcaaaagaatttaaatagaatctaaaattagcaagccaatcagcacttctatttccctcctgccaggtatggttgaattgcaact 1362959  T
Q  202 accagtataactttaaaaactcttgtatacggcgcatcaaggtggg 247  Q
     | ||| ||||||||||| |||||| ||||||| || |||||||||    
T  1362958 gcaagtttaactttaaaagctcttgaatacggcacaccaaggtggg 1362913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 29350579 - 29350514
Alignment:
Q  105 ataacatgaatgttaaaataatatagagagaaactaaaagtagataaccaatcaacatttctattt 170  Q
    |||||||||||||||||| |||||| ||||||| ||||| |||  | |||||||||| ||||||||    
T  29350579 ataacatgaatgttaaaagaatataaagagaaagtaaaattaggaagccaatcaacacttctattt 29350514  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 3704902 - 3704982
Alignment:
Q  63 tcataaaaaaggagacttgagacatcgttagaagaagtttccataacatgaatgttaaaataatatagagagaaactaaaa 143  Q
    |||| ||||||||||||||| || |   |||||| ||| |||||||||||||||| |||||||| |  || ||||||||||    
T  3704902 tcatcaaaaaggagacttgaaaccttactagaaggagtctccataacatgaatgtcaaaataatttcaagtgaaactaaaa 3704982  T

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